View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13076_low_11 (Length: 489)
Name: NF13076_low_11
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13076_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 32 - 482
Target Start/End: Original strand, 45887115 - 45887565
Alignment:
| Q |
32 |
ccaatgaagttgctcaaacaaaaattagtgtatatcataccaagatatttaaaatgcatccattactctttaatcgtggcatgcagcaaatactatatgg |
131 |
Q |
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| T |
45887115 |
ccaatgaagttgctcaaacacaaattagtgtatatcataccaagatatttaaaatgcatccattactctttaatcgtggcatgcagcaaatactatatgg |
45887214 |
T |
|
| Q |
132 |
ccatgacattttcttgattcaaatttcaacaacatcataacaacaaatccgaaaacacaaaacagtacaacactggaattaaagctattatttagttaaa |
231 |
Q |
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| T |
45887215 |
ccatgacattttcttgattcaaatttcaacaacatcataacaacaaatccaaaaacacaaaacagtacaacactggaattaaagctattatttagttaaa |
45887314 |
T |
|
| Q |
232 |
atgaagctaaaaacatactaataaactatctgttaatcagaaaatacatatcaccggaatctaacgcaagtgattgatgcatagtgcgttagcattgtaa |
331 |
Q |
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| T |
45887315 |
atgaagctaaaaacatactaataaactatctgttaatcagaaaatacatatcaccggaatctagcgcaggtggttgatgcgtagtgcgttagcattgtaa |
45887414 |
T |
|
| Q |
332 |
atctcaagatgctaagttcaattcatgcgaaaaatcaagcctatttcctttttctcaccttgccaccaccttgaactgaaggcttgcctttaccattacc |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45887415 |
atctcaagatgctaagttcaattcatgcgaaaaatcaagcctatttcctttttctcaccttgccaccaccttgaactgaaggcttgcctttaccattacc |
45887514 |
T |
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| Q |
432 |
atcctcaaacttcttctctttgttttccactttctttccgttcctttgctt |
482 |
Q |
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| T |
45887515 |
atcctcaaacttcttctctttgttttccactttctttccgttcctttgctt |
45887565 |
T |
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