View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13076_low_17 (Length: 390)
Name: NF13076_low_17
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13076_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 4e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 3684507 - 3684292
Alignment:
| Q |
9 |
atggacatcatcacgggagaataatgaacccaacaatcgtggctactttgactatggctacatgtaccctaaaaaggtcgttgctgtcacgtgccatggn |
108 |
Q |
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| T |
3684507 |
atggacttcaccacgggagaataatgaacccaacaatcgtggctactatgactatgggtacatgtaccctaaaaaggtcgttgctatcacgtgccatgga |
3684408 |
T |
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| Q |
109 |
nnnnnnncctcattctcagcaagttgtccacctcagattcgtcgttacttttgaaaaatggtgatgagaattggaaggtgttctctgtcatgtcagcgaa |
208 |
Q |
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| T |
3684407 |
aaaaaaacttcattctcagcaagttgtccacctcagattcgtcgttacttttgaaaaatggtgatgagaattggaaggcgttctctgtcatgtcagcgaa |
3684308 |
T |
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| Q |
209 |
atgggaagatatgtgc |
224 |
Q |
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| T |
3684307 |
atgggaagacatgtgc |
3684292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 225 - 374
Target Start/End: Complemental strand, 3684216 - 3684067
Alignment:
| Q |
225 |
ttagtggccaaagctttggttgatgatggcaggggcataaagttcttaggggagagcgagggtgatttgttgttagaggacgcttgtgagtgtttatatc |
324 |
Q |
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| T |
3684216 |
ttagtggccaaagctttggttgatggtggcaggggcataaagttcttaggggagagcgagggtgatttgttgttagaggacgcttctgagtgtttatatc |
3684117 |
T |
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| Q |
325 |
atggttccttgctcgtactcctcaaaggttgacatatggggtaatggctg |
374 |
Q |
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| T |
3684116 |
atggttccttgctcgtactcctcaaaggttgacatatggggtaatggctg |
3684067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 59 - 224
Target Start/End: Complemental strand, 3676292 - 3676119
Alignment:
| Q |
59 |
actatggctacatgtaccctaaaaaggtcgttgctgtcacgtgccatggnnnnnnnn-cctcattctcagcaagttgtccacctcagattcgtcgttact |
157 |
Q |
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| T |
3676292 |
actatggctacatgtaccctaaaaaggtcgttgttgtcacatgccatggaaaaaacaacctcattctcagcaagttgtccacctcagattcgtcattact |
3676193 |
T |
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| Q |
158 |
tttgaaaaatgg-------tgatgagaattggaaggtgttctctgtcatgtcagcgaaatgggaagatatgtgc |
224 |
Q |
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| T |
3676192 |
tttgaaaagtggtcatgactcatgagaattggaaggtgttctctgacatgtcagcaaaatgggaagatatgtgc |
3676119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 9159140 - 9159180
Alignment:
| Q |
67 |
tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg |
107 |
Q |
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| T |
9159140 |
tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg |
9159180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 9171288 - 9171248
Alignment:
| Q |
67 |
tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg |
107 |
Q |
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| T |
9171288 |
tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg |
9171248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 7013306 - 7013266
Alignment:
| Q |
67 |
tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg |
107 |
Q |
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| T |
7013306 |
tacatgtaccctaaaaaggtcgttgttgttacgtgccatgg |
7013266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 7026242 - 7026202
Alignment:
| Q |
67 |
tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg |
107 |
Q |
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| T |
7026242 |
tacatgtaccctaaaaaggtcgttgttgttacgtgccatgg |
7026202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 300
Target Start/End: Original strand, 212981 - 213023
Alignment:
| Q |
258 |
ggcataaagttcttaggggagagcgagggtgatttgttgttag |
300 |
Q |
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| T |
212981 |
ggcatgaaattcttagtggagagcgagggtgatttgttgttag |
213023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 7047293 - 7047252
Alignment:
| Q |
66 |
ctacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg |
107 |
Q |
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| T |
7047293 |
ctacatgttccctgaaaaggtcattgctgtcacgtgccatgg |
7047252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 7041950 - 7041918
Alignment:
| Q |
75 |
ccctaaaaaggtcgttgctgtcacgtgccatgg |
107 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
7041950 |
ccctataaaggtcgttgctgtcacgtgccatgg |
7041918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 9159225 - 9159277
Alignment:
| Q |
151 |
cgttacttttgaaaaatggtgatgagaattggaaggtgttctctgtcatgtca |
203 |
Q |
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| T |
9159225 |
cgttacttttgaaatgtggtgatgaggattggaaggtgatccctgacatgtca |
9159277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 9171203 - 9171151
Alignment:
| Q |
151 |
cgttacttttgaaaaatggtgatgagaattggaaggtgttctctgtcatgtca |
203 |
Q |
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| T |
9171203 |
cgttacttttgaaatgtggtgatgaggattggaaggtgatccctgacatgtca |
9171151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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