View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13076_low_2 (Length: 727)

Name: NF13076_low_2
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13076_low_2
NF13076_low_2
[»] chr4 (1 HSPs)
chr4 (22-709)||(5242604-5243285)
[»] chr7 (3 HSPs)
chr7 (28-164)||(25522985-25523121)
chr7 (252-370)||(25523273-25523391)
chr7 (111-164)||(25523128-25523181)
[»] chr6 (1 HSPs)
chr6 (306-370)||(2954053-2954117)


Alignment Details
Target: chr4 (Bit Score: 648; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 22 - 709
Target Start/End: Complemental strand, 5243285 - 5242604
Alignment:
Q  22 gtcttgaacttggactcatcaatatcaataccttcctcttcagcacgttctcctcctgacttctccatagtgctcagtcctcctttacgtcccatctcct 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5243285 gtcttgaacttggactcatcaatatcaataccttcctcttcagcacgttctcctcctgacttctccatagtgctcagtcctcctttacgtcccatctcct 5243186  T
Q  122 gatacccttctgtccctagttgctccttccttgtctgccctcccttgctccttcctttaattaaacatcaaaaattagtatcaaattttaagtatataat 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5243185 gatacccttctgtccctagttgctccttccttgtctgccctcccttgctccttcctttaattaaacaccaaaaattagtatcaaattttaagtatataat 5243086  T
Q  222 aatatgcattaatcataaactaatgtataaccttcagcaagatgttcctgagcctcaaggctcttgccaccagtgccaccaggaacaacagtctctcctt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5243085 aatatgcattaatcataaactaatgtataaccttcagcaagatgttcctgagcctcaaggctcttgccaccagtgccaccaggaacaacagtctctcctt 5242986  T
Q  322 gctttgccttctcctcaagctcttgtcggttttgttgtttagatgccattgttttttctcaaatttggattggttgattatgctatgtagtgtcactttc 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5242985 gctttgccttctcctcaagctcttgtcggttttgttgtttagatgccattgttttttctcaaatttggattggttgattatgctatgtagtgtcactttc 5242886  T
Q  422 ttgatcagtaagtactcgaagctatgtggttaaaacaaatggttaaggggtttatatagatatgtatcaaaatgtgacaaataaattaaataaataatgt 521  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||    
T  5242885 ttgatcagtaagtactcgaagc--tgtggttaaaataaatggttaaggggtttatataga----tatcaaaatgtgacaaataaattaaataaataatgt 5242792  T
Q  522 tgcatgacatgataatatttttagagtggtaaatatttgagaagatgacaacaaggtaaaaaaggaacagtaagagtggttatgaactgacacgtggatt 621  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5242791 tgcatgacatgataatatttttagagtggtaaatatttgagaagatgacaacaaggtaaaaaaggaacagtaagagtggttatgaactgacacgtggatt 5242692  T
Q  622 acagacgcggctaatttagaaacaagacacgcatgtttttggaactatgtcaatgacacgtacgaggtctagagcttagtgaattttc 709  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5242691 acagacgcggctaatttagaaacaagacacgcatgtttttggaactatatcaatgacacgtacgaggtctagagcttagtgaattttc 5242604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 25522985 - 25523121
Alignment:
Q  28 aacttggactcatcaatatcaataccttcctcttcagcacgttctcctcctgacttctccatagtgctcagtcctcctttacgtcccatctcctgatacc 127  Q
    |||||||| |||||||| || || ||||||||  ||||||||| | | || ||||| |||||||| || |||||||||||||| ||||| || |||||||    
T  25522985 aacttggattcatcaatgtctattccttcctcagcagcacgttgttcaccagacttatccatagtactgagtcctcctttacggcccatttcttgatacc 25523084  T
Q  128 cttctgtccctagttgctccttccttgtctgccctcc 164  Q
    ||||| |||| |  ||||| |||||||||||||||||    
T  25523085 cttctctccccatctgctctttccttgtctgccctcc 25523121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 252 - 370
Target Start/End: Original strand, 25523273 - 25523391
Alignment:
Q  252 ccttcagcaagatgttcctgagcctcaaggctcttgccaccagtgccaccaggaacaacagtctctccttgctttgccttctcctcaagctcttgtcggt 351  Q
    ||||||||||| ||||  ||||| ||||| ||||| ||||| ||||||||||||| |||||| || ||  || ||||| |||||||||| ||||  ||||    
T  25523273 ccttcagcaaggtgttgttgagcttcaagactctttccacctgtgccaccaggaataacagtttcaccaagccttgccctctcctcaagttcttcacggt 25523372  T
Q  352 tttgttgtttagatgccat 370  Q
    ||||||||| ||| |||||    
T  25523373 tttgttgttgagacgccat 25523391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 25523128 - 25523181
Alignment:
Q  111 tcccatctcctgatacccttctgtccctagttgctccttccttgtctgccctcc 164  Q
    ||||||||| ||||| ||||||| |||||  |||| ||||||||||||||||||    
T  25523128 tcccatctcttgatatccttctgaccctaactgctgcttccttgtctgccctcc 25523181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 306 - 370
Target Start/End: Original strand, 2954053 - 2954117
Alignment:
Q  306 acaacagtctctccttgctttgccttctcctcaagctcttgtcggttttgttgtttagatgccat 370  Q
    ||||||| |||||| | ||||||||| ||||||||||||||||  |||||||||| |||||||||    
T  2954053 acaacaggctctccctcctttgccttttcctcaagctcttgtcacttttgttgttgagatgccat 2954117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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