View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13076_low_20 (Length: 369)
Name: NF13076_low_20
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13076_low_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 369
Target Start/End: Original strand, 39237851 - 39238201
Alignment:
| Q |
19 |
ggtcttacaacaaaaacattaaaagcaacaaatgctgcacttgacaacacaaccattatagaagccaaagtaactctttcattctctgccatagcaattg |
118 |
Q |
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| T |
39237851 |
ggtcttacaacaaaaacattaaaagcaacaaatgctgcacttgacaacacaaccattatagaagccaaagtaactctttcattctctgccatagcaattg |
39237950 |
T |
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| Q |
119 |
ctatggccaaaagtacccatgacaaaacatcattaatgagtgcagatgaaagagcaaccctgcccaactctgtgttgatcagttttagctctgcaaggat |
218 |
Q |
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| T |
39237951 |
ctatggccaaaagtacccatgacaaaacatcattaatgagtgcagatgaaagagcaaccctgcccaactctgtgttgatcagttttagctctgcaaggat |
39238050 |
T |
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| Q |
219 |
cctagcaagaacaggaaatgcagtaacagaaagaacaacaccaagcattagaacaaaagctcctacataagctttttcggtgttttttaacaaaaagacg |
318 |
Q |
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| T |
39238051 |
cctagcaagaacaggaaatgcagtaacagaaagaacaacaccaagcattagaacaaaagctcctacataagctttttcggtgttttttaacaaaaagatg |
39238150 |
T |
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| Q |
319 |
gaaaatagtgctcctgttccgaatggtaatatcataccagctactgctatg |
369 |
Q |
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| T |
39238151 |
gaaaatagtgctcctgttccgaatggtaatatcataccagctactgctatg |
39238201 |
T |
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Back To:
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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 252
Target Start/End: Original strand, 44056105 - 44056212
Alignment:
| Q |
145 |
acatcattaatgagtgcagatgaaagagcaaccctgcccaactctgtgttgatcagttttagctctgcaaggatcctagcaagaacaggaaatgcagtaa |
244 |
Q |
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|||||| | |||||||||| |||||||||| | | || | ||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||| | |
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| T |
44056105 |
acatcactgatgagtgcagccgaaagagcaagctttcctatatctgtgttgatgagttttagctcggcgaggatcctagctagaacaggaaatgcagtga |
44056204 |
T |
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| Q |
245 |
cagaaaga |
252 |
Q |
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| T |
44056205 |
cagaaaga |
44056212 |
T |
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