View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13076_low_23 (Length: 355)
Name: NF13076_low_23
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13076_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 5e-81; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 196 - 348
Target Start/End: Complemental strand, 37310359 - 37310207
Alignment:
| Q |
196 |
atagaacttgttcaaaactaaaatcaaagtacactctattaaacaaattcatgtagtttcgtacctcgcctctaagttctgcataatagacagctccaaa |
295 |
Q |
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| T |
37310359 |
atagaacttgttcaaaactaaaatcaaagtacactctattaaacaaattcatgtagtttcgtacctcgcctctaagttctgcataatagacagctccaaa |
37310260 |
T |
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| Q |
296 |
tccaccttgaccaattttattatccaagctgaaattatttgtcgcctttgcta |
348 |
Q |
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| T |
37310259 |
tccaccttgaccaattttattatccaagctgaaattatttgtcgcctttgcta |
37310207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 196 - 348
Target Start/End: Complemental strand, 37238465 - 37238313
Alignment:
| Q |
196 |
atagaacttgttcaaaactaaaatcaaagtacactctattaaacaaattcatgtagtttcgtacctcgcctctaagttctgcataatagacagctccaaa |
295 |
Q |
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| T |
37238465 |
atagaacttgttcaaaactaaaatcaaagtacactctattaaacaaattcatgtagtttcgtacctcgcctctaagttctgcataatagacagctccaaa |
37238366 |
T |
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| Q |
296 |
tccaccttgaccaattttattatccaagctgaaattatttgtcgcctttgcta |
348 |
Q |
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| T |
37238365 |
tccaccttgaccaattttattatccaagctgaaattatttgtcgccttggcta |
37238313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 37310557 - 37310429
Alignment:
| Q |
1 |
gtgatgaacatgtgttaagaccttcaactcacaaagaaattctgacgatgcttgcacatccatcttcttaattgctgttttctgcatacaataagttgca |
100 |
Q |
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| T |
37310557 |
gtgatgaacatgtgttaagaccttcaactcacaaagaaattctgacgatgcttgcacatccatcttcttaattgctgttttctgcatacaataagttgca |
37310458 |
T |
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| Q |
101 |
tgagaggaaatcaatgaaaaacgtgaagg |
129 |
Q |
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| T |
37310457 |
tgagaggaaatcaatgaaaaacgtgaagg |
37310429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 37238659 - 37238532
Alignment:
| Q |
1 |
gtgatgaacatgtgttaagaccttcaactcacaaagaaattctgacgatgcttgcacatccatcttcttaattgctgttttctgcatacaataagttgca |
100 |
Q |
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| T |
37238659 |
gtgatgaacatgtgttaagaccttcaactcacagagaaattcggacgatgcttgtacatccatcttcttaattgctgttttctgcatacaataagttgca |
37238560 |
T |
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| Q |
101 |
tgagaggaaatcaatgaaaaacgtgaagg |
129 |
Q |
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| T |
37238559 |
tgagaggaaatcaatg-aaaacgtgaagg |
37238532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 33594936 - 33595042
Alignment:
| Q |
6 |
gaacatgtgttaagaccttcaactcacaaagaaattctgacgatgcttgcacatccatcttcttaattgctgttttctgcatacaataagttgcatgaga |
105 |
Q |
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|||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||| |||| ||||||||||| ||||| ||| |||||| |
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| T |
33594936 |
gaacatgtgttaagaccttcaactcacaaagaaaatctattgatgcttgtacatccatcttcttaactgctattttctgcatagaataaattgtatgaga |
33595035 |
T |
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| Q |
106 |
ggaaatc |
112 |
Q |
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||||||| |
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| T |
33595036 |
ggaaatc |
33595042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 337
Target Start/End: Complemental strand, 37202722 - 37202649
Alignment:
| Q |
264 |
cctctaagttctgcataatagacagctccaaatccaccttgaccaattttattatccaagctgaaattatttgt |
337 |
Q |
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||||| || |||||||| |||| ||||||| ||||||| ||||||||||||| ||| ||||||||||||||| |
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| T |
37202722 |
cctctcagctctgcatagaagacttctccaaaaccaccttcaccaattttattagccatgctgaaattatttgt |
37202649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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