View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13076_low_27 (Length: 329)
Name: NF13076_low_27
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13076_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 7727785 - 7727473
Alignment:
| Q |
1 |
aagcctttctgtttgaccaactttgactaaaacagatatacatactggctgctacgaattctataaatagcaaagtttaaaaccatacttatcacccaaa |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7727785 |
aagcctttctgtttgaccaactttcactaaaacagatatacatcctggctgctacgaattctataaatagcaaagattaaaaccatacttatcacccaaa |
7727686 |
T |
|
| Q |
101 |
cttgagtactctctcaacccaaactcaaaccacctcttcataagnnnnnnnnctccaaaattaagatgaagactcctccaaacatgtttctccttctcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
7727685 |
cttgagtactctctcaacccaaactcaaaccacctcttcataag-aaaaaaactccaaaattaagatgaagactcctccaaacaagtttctcctactcca |
7727587 |
T |
|
| Q |
201 |
tttaacacttctcttcctttcttccatctacttctccacatccaacgctgatga---tgatttcttctgcaatgccaatgacaaagccacccttctcaaa |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || |||||||| ||| |||| |||||||||||||||||||||||| || |||||| |
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| T |
7727586 |
cttaacacttctcttcctttcttccatctacttctccacatcaaatgctgatgatgttgagttctcctgcaatgccaatgacaaagccactctcctcaaa |
7727487 |
T |
|
| Q |
298 |
atcagagaccattt |
311 |
Q |
| |
|
|||||||||||||| |
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|
| T |
7727486 |
atcagagaccattt |
7727473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 10 - 311
Target Start/End: Complemental strand, 7731948 - 7731633
Alignment:
| Q |
10 |
tgtttgaccaactttgactaaaacagatatacatactggctgctacgaattctataaatagcaaagtttaaaacca-tacttatcacccaaacttgagta |
108 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| | |||| |||||||||||||||||| |
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| T |
7731948 |
tgtttgaccaactttcactaaaacagatatacatcctggcgactacgaattctataaatagcaaagcttaaaattaatactaatcacccaaacttgagta |
7731849 |
T |
|
| Q |
109 |
ctctctcaacccaaa-ctcaaaccacctcttcata--------agnnnnnnnnctc-caaaattaagatgaagactcctccaaacatgtttctccttctc |
198 |
Q |
| |
|
|||||| ||| |||| ||||||||||||||||||| | ||| ||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
7731848 |
ctctcttaacacaaagctcaaaccacctcttcatatttttttcaactaaaaaactctcaaaattaagatgaagactactccaaacatgtttctcctactc |
7731749 |
T |
|
| Q |
199 |
catttaacacttctcttcctttcttccatctacttctccacatccaacgctgatga---tgatttcttctgcaatgccaatgacaaagccacccttctca |
295 |
Q |
| |
|
|| || ||||| |||||||||||||||||||||||||||||||| || |||||||| ||| |||| |||||| |||||||||||||||||||| |||| |
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| T |
7731748 |
cacttgacactcctcttcctttcttccatctacttctccacatcaaatgctgatgatgttgagttctcctgcaacgccaatgacaaagccaccctcctca |
7731649 |
T |
|
| Q |
296 |
aaatcagagaccattt |
311 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
7731648 |
aaatcagagaccattt |
7731633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 153 - 311
Target Start/End: Complemental strand, 7699766 - 7699608
Alignment:
| Q |
153 |
ctccaaaattaagatgaagactcctccaaacatgtttctccttctccatttaacacttctcttcctttcttccatctacttctccacatccaacgctgat |
252 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||| ||||| | |
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| T |
7699766 |
ctccaaaattaagatgaagacttctccaaacatgtttctcctactccacttaacacttctcttcctttcttccatctacttctccaaatcaaacgcaagt |
7699667 |
T |
|
| Q |
253 |
gatgatttcttctgcaatgccaatgacaaagccacccttctcaaaatcagagaccattt |
311 |
Q |
| |
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||||| ||||||||||| ||| | ||||||||| |||| |||||||||||||||||||| |
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|
| T |
7699666 |
gatgacttcttctgcaacgccgacgacaaagccgccctcctcaaaatcagagaccattt |
7699608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 153 - 311
Target Start/End: Complemental strand, 7739952 - 7739791
Alignment:
| Q |
153 |
ctccaaaattaagatgaagactcctccaaacatgtttctccttctccatttaacacttctcttcctttcttccatctacttctccacatccaacgctgat |
252 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||| || |||||| |
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|
| T |
7739952 |
ctccaaaattaagatgaagactactccaaacaagtttctcctactccacttgacactcctcttcctttcttccatctacttctccacatcaaatgctgat |
7739853 |
T |
|
| Q |
253 |
ga---tgatttcttctgcaatgccaatgacaaagccacccttctcaaaatcagagaccattt |
311 |
Q |
| |
|
|| ||| |||| |||||| |||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
7739852 |
gatgttgagttctcctgcaacgccaatgacaaagccaccctcctcaaaatcagagaccattt |
7739791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 162 - 313
Target Start/End: Complemental strand, 7714102 - 7713951
Alignment:
| Q |
162 |
taagatgaagactcctccaaacatgtttctccttctccatttaacacttctcttcctttcttccatctacttctccacatccaacgctgatgatgatttc |
261 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||| ||||||| ||||||||||||||||||||||||||| ||| ||||| |||||| ||| |
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| T |
7714102 |
taagatgaagactcctccaaacatgtttatgctactcagcctaacactcttcttcctttcttccatctacttctccaaatcaaacgcaagtgatgacttc |
7714003 |
T |
|
| Q |
262 |
ttctgcaatgccaatgacaaagccacccttctcaaaatcagagaccattttg |
313 |
Q |
| |
|
|||||||| ||| | ||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
7714002 |
ttctgcaacgccgacgacaaagccgccctcctcaaaatcagagaccattttg |
7713951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 7740083 - 7739995
Alignment:
| Q |
10 |
tgtttgaccaactttgactaaaacagatatacatactggctgctacgaattctataaatagcaaagtttaaaaccatacttatcacccaaa |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||| |
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|
| T |
7740083 |
tgtttgaccaactttcactaaaacagata--catactggctgctacgttttctataaatagcaaagcttaaaatcatacttatcacccaaa |
7739995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 249
Target Start/End: Original strand, 12907694 - 12907786
Alignment:
| Q |
157 |
aaaattaagatgaagactcctccaaacatgtttctccttctccatttaacacttctcttcctttcttccatctacttctccacatccaacgct |
249 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| || ||||| |||||||| ||||||| |||| ||| |||||||| | ||| |||||| |
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|
| T |
12907694 |
aaaattaagatgaagacttctcctaacatgtttcttctactccagttaacactcatcttcctctctttcatatacttctctaaatcaaacgct |
12907786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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