View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13076_low_3 (Length: 621)
Name: NF13076_low_3
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13076_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 183 - 608
Target Start/End: Original strand, 41845589 - 41846022
Alignment:
| Q |
183 |
gcaggtggggaagattgaagacggtattgagttcataaactcaaagcctaaacctctagcaatttatgccttcacaaagaacaaaacactgcagagaaga |
282 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41845589 |
gcaggtggagaagattgaagacggtattgagttcataaactcaaagcctaaacctctagcaatttatgccttcacaaagaacaatacactgcagagaaga |
41845688 |
T |
|
| Q |
283 |
ttggtatctgaaacatcatctgggagcattgtttttaatgatgcaattctacaggtatttatttgctgatagtgacttgcattatcacttatttaaaccg |
382 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41845689 |
ttggtatctgaaacatcatctgggagcattgtatttaatgatgcaattctacaggtatttatttgctgatagtgacttgcattatcacttatttcaaccg |
41845788 |
T |
|
| Q |
383 |
ctaattttatcaaacacttcaattattatacgaaagataac--------tannnnnnnnngcagtatgtagcggataccatcccatttggaggagttggt |
474 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||| | ||||||| |||||||||||||||||||||||||||||||| |
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| T |
41845789 |
ctaattttatcaaacacttcgattattatactaaagataactttttttttttttttttttgcagtatatagcggataccatcccatttggaggagttggt |
41845888 |
T |
|
| Q |
475 |
gaatgtggatttggcaagtatcatgggaagttctcatttgatgcattcagtcaccataaagctgtggctaggagaagttactacactgatttttggttca |
574 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41845889 |
gaatgtggatttggcaagtatcatgggaagttctcatttgatgcattcagtcaccataaagctgtggctaggagaagttactacactgatttttggttca |
41845988 |
T |
|
| Q |
575 |
ggtttcctccatggaatcttaacaagttccaact |
608 |
Q |
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| T |
41845989 |
ggtttcctccatggaatcttaacaagttccaact |
41846022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 41845420 - 41845522
Alignment:
| Q |
13 |
aatattactagatcccccacttgaatcagcaataatgacagaagaaatctttggccctgtgcttcccataataactgtaagatatatatctgcaacataa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41845420 |
aatattactagatcccccacttgaatcagcaataatgacagaagaaatctttggccctgtgcttcccataataactgtaagatatatatctgcaacataa |
41845519 |
T |
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| Q |
113 |
ttt |
115 |
Q |
| |
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||| |
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| T |
41845520 |
ttt |
41845522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 183 - 341
Target Start/End: Original strand, 24401194 - 24401352
Alignment:
| Q |
183 |
gcaggtggggaagattgaagacggtattgagttcataaactcaaagcctaaacctctagcaatttatgccttcacaaagaacaaaacactgcagagaaga |
282 |
Q |
| |
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|||||||| |||||||| ||| ||||||| ||||||| ||| | |||||| ||||| || |||||| ||||| || |||||||||||||||| ||| |
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| T |
24401194 |
gcaggtggataagattgaggacagtattgaattcataagctctaggcctaagcctcttgccctttatgttttcaccaaaaacaaaacactgcagaacaga |
24401293 |
T |
|
| Q |
283 |
ttggtatctgaaacatcatctgggagcattgtttttaatgatgcaattctacaggtatt |
341 |
Q |
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|| |||||||||||||||| || || || ||| |||||||||||||| || ||||| |
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| T |
24401294 |
atgatatctgaaacatcatcaggcagtgttactttcaatgatgcaattctgcaagtatt |
24401352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 457 - 571
Target Start/End: Original strand, 24401455 - 24401569
Alignment:
| Q |
457 |
ccatttggaggagttggtgaatgtggatttggcaagtatcatgggaagttctcatttgatgcattcagtcaccataaagctgtggctaggagaagttact |
556 |
Q |
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|||||||||||||| |||| | |||||||||||| ||| |||||||| ||||| ||||| ||||||||||||| ||||| | | ||| ||||||| || |
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| T |
24401455 |
ccatttggaggagtaggtggaagtggatttggcatgtaccatgggaaattctcctttgacacattcagtcaccaaaaagcaattgttagaagaagtttct |
24401554 |
T |
|
| Q |
557 |
acactgatttttggt |
571 |
Q |
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| T |
24401555 |
taactgatttttggt |
24401569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 407
Target Start/End: Original strand, 7897150 - 7897179
Alignment:
| Q |
378 |
aaccgctaattttatcaaacacttcaatta |
407 |
Q |
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|
|||||||||||||||||||||||||||||| |
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| T |
7897150 |
aaccgctaattttatcaaacacttcaatta |
7897179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 407
Target Start/End: Original strand, 50541410 - 50541439
Alignment:
| Q |
378 |
aaccgctaattttatcaaacacttcaatta |
407 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
50541410 |
aaccgctaattttatcaaacacttcaatta |
50541439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 376 - 404
Target Start/End: Complemental strand, 34394799 - 34394771
Alignment:
| Q |
376 |
taaaccgctaattttatcaaacacttcaa |
404 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
34394799 |
taaaccgctaattttatcaaacacttcaa |
34394771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 375 - 407
Target Start/End: Original strand, 32839447 - 32839479
Alignment:
| Q |
375 |
ttaaaccgctaattttatcaaacacttcaatta |
407 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
32839447 |
ttaaaccgctaattttatcaaacaattcaatta |
32839479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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