View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13076_low_31 (Length: 287)
Name: NF13076_low_31
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13076_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 46633210 - 46633487
Alignment:
| Q |
1 |
tccttttagagttctaaagaaaatataagttctgttttttatgatatagagtgctgggatttattgaaagtacaacttctgtagagnnnnnnnnnncttc |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46633210 |
tccttttagagttccaaagaaaatataagttctgttttttatgatatagagtgctgggatttattgaaagtacaacttctgtagagttttttttt-cttc |
46633308 |
T |
|
| Q |
101 |
ttatattcattgtttgtactgtctgtgaattacatttgtgtgaaggatttgtaatggttttttgtcatgtataaatgttaccaagttagatatatttcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46633309 |
ttatattcattgtttgtactgtctgtgaattacatttgtgtgaaggatttgtaatggttttttgtcatgtataaatgttaccaagttagatatatttcag |
46633408 |
T |
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| Q |
201 |
aacagcactgttttactaaagagttgtttattattttctttgatgatttacttagtccatcactagttgacaaatattcttc |
282 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46633409 |
aacagcactgttttactaaagagttgt---ttattttctttgatgatttacttagtccatcactagttgacaaatattcttc |
46633487 |
T |
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Back To:
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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 7718059 - 7718136
Alignment:
| Q |
9 |
gagttctaaagaaaatataagttctgttttttatgatatagagtgctgggatttattgaaagtacaacttctgtagag |
86 |
Q |
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|||||| |||||||||| |||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
7718059 |
gagttcaaaagaaaatacaagttctgttttttataatatagagtgctcggatatattgaaagtacaacttctgtagag |
7718136 |
T |
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