View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13076_low_32 (Length: 285)
Name: NF13076_low_32
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13076_low_32 |
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| [»] scaffold0512 (1 HSPs) |
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| [»] scaffold0115 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 22318847 - 22319078
Alignment:
| Q |
9 |
atcatcatctttttcacaaggaaggcgagctgtattgttnnnnnnnnnnnnnnnnntattgttattaaaaggtgatgtgtgtttaagttggaaaggaaaa |
108 |
Q |
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| T |
22318847 |
atcatcatctttttcacaaggaaggcgagctgtattgttaaaaaagagaaaaaaaatattgttattaaaaggtgatgtgtgtttaagttggaaaggaaaa |
22318946 |
T |
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| Q |
109 |
tttgagaatgctnnnnnnn-tgacatacttctgaaggttgcaagaagaaacggagaaataaagataatcaaagcataaacaaacatgaaaactttagcca |
207 |
Q |
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| T |
22318947 |
tttgagaatgctaaaaaaaatgacatacttctgaaggttgcaagaagaaacggagaaacaaagataatcaaagcataaacaaacatgtaaactttagcca |
22319046 |
T |
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| Q |
208 |
taattttgttgctctgaatgtaataaatgtat |
239 |
Q |
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|||||||||| ||||||||||||||||||||| |
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| T |
22319047 |
taattttgttactctgaatgtaataaatgtat |
22319078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 20871513 - 20871467
Alignment:
| Q |
162 |
gaaataaagataatcaaagcataaacaaacatgaaaactttagccat |
208 |
Q |
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||||||||||| |||||||||||||||||||||| || ||||||||| |
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| T |
20871513 |
gaaataaagatgatcaaagcataaacaaacatgagaattttagccat |
20871467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 19100125 - 19100071
Alignment:
| Q |
160 |
gagaaataaagataatcaaagcataaacaaacatgaaaactttagccataatttt |
214 |
Q |
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| T |
19100125 |
gagaaagaaaaatgatcaaagcataaacaaagatgaaaattttagccatattttt |
19100071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 22200286 - 22200250
Alignment:
| Q |
152 |
aagaaacggagaaataaagataatcaaagcataaaca |
188 |
Q |
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| T |
22200286 |
aagaaatggagaaagaaagataatcaaagcataaaca |
22200250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0512 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0512
Description:
Target: scaffold0512; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 10745 - 10785
Alignment:
| Q |
155 |
aaacggagaaataaagataatcaaagcataaacaaacatga |
195 |
Q |
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| T |
10745 |
aaacggagaaagaaagataatcaaagcataaacaaacatga |
10785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 31646 - 31597
Alignment:
| Q |
160 |
gagaaataaagataatcaaagcataaacaaacatgaaaactttagccata |
209 |
Q |
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|||||| |||||| |||||| |||||||||||||||||| |||||||||| |
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| T |
31646 |
gagaaagaaagatgatcaaaacataaacaaacatgaaaattttagccata |
31597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 26332642 - 26332588
Alignment:
| Q |
160 |
gagaaataaagataatcaaagcataaacaaacatgaaaactttagccataatttt |
214 |
Q |
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|||||| |||| | ||||||||||||||||||||| ||| |||||||||| |||| |
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| T |
26332642 |
gagaaagaaagttgatcaaagcataaacaaacatggaaaatttagccatattttt |
26332588 |
T |
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