View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13076_low_34 (Length: 278)
Name: NF13076_low_34
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13076_low_34 |
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| [»] chr8 (10 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 22 - 278
Target Start/End: Complemental strand, 15751453 - 15751197
Alignment:
| Q |
22 |
gaataaaaccttgtctggtctagctatgctctcgttcaaatagcctaacacatggtcccaaaatgaaccaacatgacatatccccttacaatacctttca |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15751453 |
gaataaaaccttgtctggtctagctatgctctcgttcaaatagcctaacacatggtcccaaaatgaaccaacatgacatatccccttacaatacctttca |
15751354 |
T |
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| Q |
122 |
aaatcatcctctatagttattgtaggaaaatcaaaatttaatgaaattttgttcataaaattccaatatgacacataagtgtcaaaagggttcctgcata |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
15751353 |
aaatcatcctctatagttattgtaggaaaatcaaaatttaatgaaattttgttcataaaattccaatatgacacgtaagtgtcaaaagggttcctgcata |
15751254 |
T |
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| Q |
222 |
tgtaaattatcttacaattggattccttaattgacttagctaatgaagcaaaaggaa |
278 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| |
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| T |
15751253 |
tgtaaattatcttacaattggattccttgattgactttgctaaggaagcaaaaggaa |
15751197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 253
Target Start/End: Original strand, 14348038 - 14348109
Alignment:
| Q |
182 |
ttccaatatgacacataagtgtcaaaagggttcctgcatatgtaaattatcttacaattggattccttaatt |
253 |
Q |
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|||| |||||| |||||||||||||| |||||| | |||||||||||||||||||||||||| || |||||| |
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| T |
14348038 |
ttcctatatgatacataagtgtcaaatgggttcatacatatgtaaattatcttacaattggactctttaatt |
14348109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 268
Target Start/End: Original strand, 4506593 - 4506670
Alignment:
| Q |
191 |
gacacataagtgtcaaaagggttcctgcatatgtaaattatcttacaattggattccttaattgacttagctaatgaa |
268 |
Q |
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| T |
4506593 |
gacacaaaagtgtcaaaaggatttctacatatataaattattttacaattggactctttaattgacttggctagtgaa |
4506670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 15000277 - 15000217
Alignment:
| Q |
198 |
aagtgtcaaaagggttcctgcatatgtaaattatcttacaattggattccttaattgactt |
258 |
Q |
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| T |
15000277 |
aagtgtcaagtggattcctacatatataaatgatcttacaattggattccttaattgactt |
15000217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 13033709 - 13033603
Alignment:
| Q |
18 |
tcaagaataaaaccttgtctggtctagctatgctctcgttcaaatagcctaacacatggtcccaaaatgaaccaacatgacatatccccttacaatacct |
117 |
Q |
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|||||||||||||||| | |||||| |||| ||||| ||||| || || |||| || ||||||||| | ||||| |||||| |||||||||||||| |
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| T |
13033709 |
tcaagaataaaaccttatgtggtctttctatactctccttcaagtaacccaacatattgtcccaaaacggaccaaataaacatattcccttacaatacct |
13033610 |
T |
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| Q |
118 |
ttcaaaa |
124 |
Q |
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||||||| |
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| T |
13033609 |
ttcaaaa |
13033603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 15067034 - 15066928
Alignment:
| Q |
18 |
tcaagaataaaaccttgtctggtctagctatgctctcgttcaaatagcctaacacatggtcccaaaatgaaccaacatgacatatccccttacaatacct |
117 |
Q |
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|||||||||||||| | |||||||| |||||||||| ||||| || || |||| || |||||| || | ||||| | |||||| |||||||| ||||| |
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| T |
15067034 |
tcaagaataaaaccctatctggtctttctatgctctccttcaagtaacccaacatattgtcccagaacggaccaaaaaaacatattcccttacagtacct |
15066935 |
T |
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| Q |
118 |
ttcaaaa |
124 |
Q |
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||||||| |
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| T |
15066934 |
ttcaaaa |
15066928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 15214406 - 15214512
Alignment:
| Q |
18 |
tcaagaataaaaccttgtctggtctagctatgctctcgttcaaatagcctaacacatggtcccaaaatgaaccaacatgacatatccccttacaatacct |
117 |
Q |
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|||||||||||||| | |||||||| |||||||||| ||||| || || |||| || |||||||| | ||||| |||||| |||||||||||||| |
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| T |
15214406 |
tcaagaataaaaccctatctggtctttctatgctctccttcaagtaacccaacatattatcccaaaacggaccaaataaacatattcccttacaatacct |
15214505 |
T |
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| Q |
118 |
ttcaaaa |
124 |
Q |
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||||||| |
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| T |
15214506 |
ttcaaaa |
15214512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 15000457 - 15000421
Alignment:
| Q |
18 |
tcaagaataaaaccttgtctggtctagctatgctctc |
54 |
Q |
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||||||||||||||||| ||||||||||||||||||| |
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| T |
15000457 |
tcaagaataaaaccttgcctggtctagctatgctctc |
15000421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 258
Target Start/End: Original strand, 15214555 - 15214646
Alignment:
| Q |
167 |
attttgttcataaaattccaatatgacacataagtgtcaaaagggttcctgcatatgtaaattatcttacaattggattccttaattgactt |
258 |
Q |
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|||||||| || ||| |||||||||| ||| | || ||||| ||||| || ||||| |||||||| ||||||||||| || |||| |||||| |
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| T |
15214555 |
attttgttgatgaaaatccaatatgatacaaatgtatcaaatgggtttctacatatataaattattttacaattggactctttaactgactt |
15214646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 15066883 - 15066794
Alignment:
| Q |
169 |
tttgttcataaaattccaatatgacacataagtgtcaaaagggttcctgcatatgtaaattatcttacaattggattccttaattgactt |
258 |
Q |
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|||||| || ||| |||||||||| ||| | || ||||| ||||| || ||||| |||||||| ||||||||||| || | ||||||||| |
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| T |
15066883 |
tttgttgatgaaagtccaatatgatacaaatgtatcaaatgggtttctacatatataaattattttacaattggactcttgaattgactt |
15066794 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 1626595 - 1626840
Alignment:
| Q |
18 |
tcaagaataaaaccttgtctggtctagctatgctctcgttcaaatagcctaacacatggtcccaaaatgaaccaacatgacatatccccttacaatacct |
117 |
Q |
| |
|
|||||||||||| ||||| |||||||||| ||||||| ||||| || || |||| |||||||||||||| |||||||||||||| |||| |||||| | |
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| T |
1626595 |
tcaagaataaaatcttgtttggtctagctttgctctccttcaagtaacccaacatatggtcccaaaatggaccaacatgacataatccctcacaatattt |
1626694 |
T |
|
| Q |
118 |
ttcaaaatcatcctctatagttattgtaggaaaatcaaaatttaatgaaattttgttcataaaattccaatatgacacataagtgtcaaaagggttcctg |
217 |
Q |
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||||||||||||||||| |||| |||||| ||| |||||||| |||||||||||| ||||||||||| |||||| |||||||||| |||||||| |
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| T |
1626695 |
ttcaaaatcatcctctaaagttgatgtaggtaaagattgatttaatgcaattttgttcatgaaattccaataagacacaaaagtgtcaaatgggttccta |
1626794 |
T |
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| Q |
218 |
catatgtaaattatcttacaattggattccttaattgacttagcta |
263 |
Q |
| |
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|||||||||||||||||||||||||| || ||||| ||||| |||| |
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| T |
1626795 |
catatgtaaattatcttacaattggactctttaatagacttggcta |
1626840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 1618046 - 1618290
Alignment:
| Q |
19 |
caagaataaaaccttgtctggtctagctatgctctcgttcaaatagcctaacacatggtcccaaaatgaaccaacatgacatatccccttacaatacctt |
118 |
Q |
| |
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||||||||||| ||||| |||||||||||||||||| ||||| || || |||| ||||||||| |||| |||||||||||||||||| |||||||| ||| |
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| T |
1618046 |
caagaataaaatcttgtttggtctagctatgctctccttcaagtaacccaacatatggtcccagaatggaccaacatgacatatccctttacaatatctt |
1618145 |
T |
|
| Q |
119 |
tcaaaatcatcctctatagttattgtaggaaaatcaaaatttaatgaaattttgttcataaaattccaatatgacacataagtgtcaaaagggttcctgc |
218 |
Q |
| |
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|||||||||||||||| || |||| ||||||| |||||||||||| ||||||||||| |||||| |||||||||| ||||| || | |
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| T |
1618146 |
tcaaaatcatcctctaaag--attg-------------atttaattcaattttgttcatgaaattccaataagacacaaaagtgtcaaatgggtttctac |
1618230 |
T |
|
| Q |
219 |
atatgtaaattatcttacaattggattccttaattgacttagctaatgaagcaaaaggaa |
278 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||| |||| |||| |||||||| |
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|
| T |
1618231 |
atatgtaaattatcttacaattggattctttaattgacttggctagagaagtaaaaggaa |
1618290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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