View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13076_low_35 (Length: 277)
Name: NF13076_low_35
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13076_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 133 - 232
Target Start/End: Original strand, 40165337 - 40165436
Alignment:
| Q |
133 |
ccatgatccttgattgttgtcaacaacatgaggatcatttaagattctaattctgctgttaattttcttaaaaattaaaataaagttggaaacttgggat |
232 |
Q |
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| T |
40165337 |
ccatgatcattgattgttgtcaacaacatgaggatcatttaagattctaattctactgttatttttcttaaaaattaaaataaagttggaaagttgggat |
40165436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 40165206 - 40165250
Alignment:
| Q |
134 |
catgatccttgattgttgtcaacaacatgaggatcatttaagatt |
178 |
Q |
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| T |
40165206 |
catgatccttgattgctgtcaaaaacatgaggatcatttaagatt |
40165250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 130 - 232
Target Start/End: Complemental strand, 45455903 - 45455801
Alignment:
| Q |
130 |
attccatgatccttgattgttgtcaacaacatgaggatcatttaagattctaattctgctgttaattttcttaaaaattaaaataaagttggaaacttgg |
229 |
Q |
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| T |
45455903 |
attccatgatcattgattgttgtcaacaacatgagaatcatttaagattctaattctactgttaattttcaaaaaaattaaaataaagttggaaacttgg |
45455804 |
T |
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| Q |
230 |
gat |
232 |
Q |
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||| |
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| T |
45455803 |
gat |
45455801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 7827204 - 7827154
Alignment:
| Q |
128 |
ctattccatgatccttgattgttgtcaacaacatgaggatcatttaagatt |
178 |
Q |
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| T |
7827204 |
ctattccatgatcgttgattgttgacaacaacttgaggatcaattaagatt |
7827154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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