View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13076_low_36 (Length: 274)

Name: NF13076_low_36
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13076_low_36
NF13076_low_36
[»] chr4 (13 HSPs)
chr4 (19-206)||(7141552-7141738)
chr4 (207-274)||(8740404-8740471)
chr4 (207-269)||(39863892-39863954)
chr4 (207-274)||(46494507-46494574)
chr4 (207-272)||(51066449-51066514)
chr4 (207-274)||(50905704-50905771)
chr4 (207-261)||(7173707-7173761)
chr4 (215-271)||(2294822-2294878)
chr4 (207-274)||(36192498-36192564)
chr4 (213-270)||(32139126-32139183)
chr4 (231-274)||(51714074-51714117)
chr4 (231-273)||(30970494-30970536)
chr4 (207-246)||(51066205-51066244)
[»] chr7 (13 HSPs)
chr7 (201-274)||(35109641-35109714)
chr7 (207-274)||(16059462-16059529)
chr7 (207-274)||(21577207-21577274)
chr7 (207-274)||(38265346-38265413)
chr7 (207-273)||(18117054-18117120)
chr7 (207-274)||(34721790-34721857)
chr7 (218-274)||(41151139-41151195)
chr7 (210-274)||(45278411-45278475)
chr7 (207-274)||(11216725-11216792)
chr7 (206-273)||(38405264-38405331)
chr7 (210-274)||(48176359-48176422)
chr7 (207-261)||(40038621-40038675)
chr7 (245-274)||(12472115-12472144)
[»] chr3 (14 HSPs)
chr3 (207-274)||(7417754-7417821)
chr3 (207-274)||(8400811-8400878)
chr3 (206-274)||(35198720-35198788)
chr3 (207-274)||(22855843-22855910)
chr3 (207-273)||(48078051-48078117)
chr3 (216-274)||(55467964-55468022)
chr3 (207-271)||(34824512-34824576)
chr3 (207-274)||(52545277-52545344)
chr3 (207-268)||(39438934-39438995)
chr3 (222-274)||(43334163-43334215)
chr3 (236-274)||(50726106-50726144)
chr3 (236-274)||(50786704-50786742)
chr3 (234-271)||(50823681-50823718)
chr3 (234-271)||(50852142-50852179)
[»] chr8 (14 HSPs)
chr8 (207-274)||(19723267-19723334)
chr8 (207-274)||(4840096-4840163)
chr8 (207-274)||(27881097-27881164)
chr8 (207-274)||(28021278-28021345)
chr8 (207-267)||(22711465-22711525)
chr8 (207-274)||(32296748-32296815)
chr8 (207-273)||(11403957-11404023)
chr8 (207-273)||(11610236-11610302)
chr8 (208-274)||(28739670-28739736)
chr8 (208-274)||(6097521-6097587)
chr8 (206-259)||(24475120-24475173)
chr8 (207-274)||(30682795-30682862)
chr8 (232-274)||(29767169-29767211)
chr8 (207-271)||(41553244-41553305)
[»] chr5 (5 HSPs)
chr5 (207-273)||(17064279-17064345)
chr5 (207-274)||(20983112-20983179)
chr5 (207-274)||(35237132-35237199)
chr5 (235-274)||(37976530-37976569)
chr5 (218-259)||(41910793-41910834)
[»] chr2 (20 HSPs)
chr2 (207-271)||(2357187-2357251)
chr2 (207-274)||(6672902-6672969)
chr2 (207-274)||(40155996-40156063)
chr2 (207-272)||(5039376-5039441)
chr2 (207-272)||(44650349-44650414)
chr2 (207-274)||(7860255-7860322)
chr2 (207-274)||(10745341-10745408)
chr2 (207-274)||(17136343-17136410)
chr2 (207-271)||(2754163-2754227)
chr2 (207-274)||(25987771-25987838)
chr2 (201-272)||(30372791-30372862)
chr2 (207-271)||(26690110-26690174)
chr2 (207-270)||(2098953-2099016)
chr2 (207-274)||(13047260-13047324)
chr2 (207-267)||(36380248-36380308)
chr2 (223-274)||(21637869-21637920)
chr2 (233-271)||(36836441-36836479)
chr2 (244-274)||(45137079-45137109)
chr2 (216-273)||(3200847-3200903)
chr2 (207-252)||(21487106-21487151)
[»] chr1 (10 HSPs)
chr1 (206-274)||(15034410-15034478)
chr1 (207-274)||(30054551-30054618)
chr1 (207-271)||(20014414-20014478)
chr1 (207-274)||(45323962-45324029)
chr1 (207-274)||(30370169-30370236)
chr1 (210-274)||(21090074-21090138)
chr1 (207-274)||(12025137-12025204)
chr1 (231-274)||(4573359-4573402)
chr1 (207-274)||(33763363-33763430)
chr1 (213-261)||(35617942-35617990)
[»] chr6 (5 HSPs)
chr6 (207-274)||(35163859-35163926)
chr6 (210-274)||(14496311-14496375)
chr6 (207-274)||(2711843-2711910)
chr6 (213-274)||(19686936-19686997)
chr6 (207-274)||(14505632-14505698)
[»] scaffold0021 (1 HSPs)
scaffold0021 (207-274)||(107800-107867)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 7141552 - 7141738
Alignment:
Q  19 tcacgcgggtgagtgatttgacgagagcttcgattcactatcatgttctcatgattcagttgagaaacagctaaatggcgacgtcaggtggcgttggtag 118  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141552 tcacgcgggtgagtggtttgacgagagcttcgattcactatgatgttctcatgattcagttgagaaacagctaaatggcgacgtcaggtggcgttggtag 7141651  T
Q  119 cgggggatgcacgagagagaagagtgaggagagataaatttttgttgtaaataaattttgtgaaggaaattaacttatatagttgtgg 206  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141652 cgggggatgcacgagagagaagagtgaggagagataaa-ttttgttgtaaataaattttgtgaaggaaattaacttatatagttgtgg 7141738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 8740404 - 8740471
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8740404 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagatcccgggttcgagccc 8740471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 39863954 - 39863892
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcg 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39863954 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcg 39863892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 46494574 - 46494507
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  46494574 aactccaaaggtttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 46494507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 51066449 - 51066514
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagc 272  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  51066449 aactccaaagacttggtctagtggtaaaaagacaggtcttgaatccgagagaactcgggttcgagc 51066514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 50905704 - 50905771
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  50905704 aactccaaaggtttagtctagtggtaaaaagacaggtcttgaatccgagagaatctgggttcgagccc 50905771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 7173761 - 7173707
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacc 261  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7173761 aactccaaaggcttggtctagtggtaaaatgacaggtcttgaatccgagagaacc 7173707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 2294878 - 2294822
Alignment:
Q  215 aggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgag 271  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  2294878 aggcttggtctagtggtaaaaagacaggtcttgaattcgagagaactcgggttcgag 2294822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 36192498 - 36192564
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||| || |||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  36192498 aactccaaaggtttagtct-gtggtaaaaagacaggtcttgaattcgagagaacccgggttcgagccc 36192564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 32139126 - 32139183
Alignment:
Q  213 aaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcga 270  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||    
T  32139126 aaaggcttggtctagtggtaaaaggacaggtcatgaatccgagagaacctgggttcga 32139183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 274
Target Start/End: Complemental strand, 51714117 - 51714074
Alignment:
Q  231 taaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  51714117 taaaatgacaggtcttgaatccgagagaacccgggttcgagccc 51714074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 273
Target Start/End: Complemental strand, 30970536 - 30970494
Alignment:
Q  231 taaaaagacaggtcttgaatccgagagaacccgggttcgagcc 273  Q
    ||||| ||||||||||||||||||||||| |||||||||||||    
T  30970536 taaaatgacaggtcttgaatccgagagaatccgggttcgagcc 30970494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 246
Target Start/End: Original strand, 51066205 - 51066244
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtctt 246  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  51066205 aactccaaagacttggtctagtggtaaaaagacaagtctt 51066244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 201 - 274
Target Start/End: Original strand, 35109641 - 35109714
Alignment:
Q  201 ttgtggaactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35109641 ttgtggaactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 35109714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 16059529 - 16059462
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16059529 aactccaaaggcttggactagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 16059462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 21577274 - 21577207
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21577274 aacttcaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 21577207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 38265413 - 38265346
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38265413 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacctgggttcgagccc 38265346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 207 - 273
Target Start/End: Complemental strand, 18117120 - 18117054
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagcc 273  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18117120 aactccaaaggcttgttctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagcc 18117054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 34721790 - 34721857
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  34721790 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccggattcaagccc 34721857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 41151139 - 41151195
Alignment:
Q  218 cttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41151139 cttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 41151195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 45278411 - 45278475
Alignment:
Q  210 tccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  45278411 tccaaagtcttggtctagtggtaaaaagataggtcttgaatccgagataacccgggttcgagccc 45278475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 11216725 - 11216792
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||    
T  11216725 aactccaaaggtttggtctagtggtaaagtgacaggtcttgaatctgagagaacccgggttcgagccc 11216792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 206 - 273
Target Start/End: Complemental strand, 38405331 - 38405264
Alignment:
Q  206 gaactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagcc 273  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||  || |||||||||    
T  38405331 gaacttcaaaggcttcgtctagtggtaaaaagacaggtcttgaatccgagagaattcgagttcgagcc 38405264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 48176359 - 48176422
Alignment:
Q  210 tccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||||||||| |||||||||||||| |||| |||||||||||| ||||||||||||||    
T  48176359 tccaaaggcttggtcta-tggtaaaaagacagatcttaaatccgagagaatccgggttcgagccc 48176422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 40038621 - 40038675
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacc 261  Q
    |||||||||| |||| ||||||||||||||||||||||||||||| |||||||||    
T  40038621 aactccaaagacttgatctagtggtaaaaagacaggtcttgaatctgagagaacc 40038675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 245 - 274
Target Start/End: Original strand, 12472115 - 12472144
Alignment:
Q  245 ttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||||||||||||||||||||||    
T  12472115 ttgaatccgagagaacccgggttcgagccc 12472144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 7417754 - 7417821
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7417754 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 7417821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 8400811 - 8400878
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8400811 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 8400878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 206 - 274
Target Start/End: Original strand, 35198720 - 35198788
Alignment:
Q  206 gaactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35198720 gaacttcaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 35198788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 22855843 - 22855910
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||    
T  22855843 aactccaaaggtttggtctagtggtaaaaagacaggtcttaaattcgagagaacccaggttcgagccc 22855910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 273
Target Start/End: Complemental strand, 48078117 - 48078051
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagcc 273  Q
    |||| |||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||    
T  48078117 aacttcaaaggcttggtctagtggtaaaatgacaggtcttgaattcgagagaactcgggttcgagcc 48078051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 55467964 - 55468022
Alignment:
Q  216 ggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    |||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||||    
T  55467964 ggcttggtctagtggtaaaatgacatgtcttgaattcgagagaatccgggttcgagccc 55468022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 271
Target Start/End: Original strand, 34824512 - 34824576
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgag 271  Q
    ||||||||||  |||||||||||||||||||| || ||||||||||||||||||| | |||||||    
T  34824512 aactccaaagatttggtctagtggtaaaaagatagatcttgaatccgagagaacctgagttcgag 34824576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 52545277 - 52545344
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||| ||||| ||||||| ||| ||||| |||||||||||||||||||| ||  |||||||||||||    
T  52545277 aactcgaaaggtttggtctggtgataaaatgacaggtcttgaatccgagaaaattcgggttcgagccc 52545344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 268
Target Start/End: Complemental strand, 39438995 - 39438934
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttc 268  Q
    |||| |||||||||| | ||||| ||||||||||| ||||||||||||||||| || |||||    
T  39438995 aacttcaaaggcttgctatagtgttaaaaagacagatcttgaatccgagagaatccaggttc 39438934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 43334215 - 43334163
Alignment:
Q  222 gtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    |||||| ||||||| |||| || ||||||||||||||||||| ||||||||||    
T  43334215 gtctagaggtaaaatgacaagttttgaatccgagagaacccgagttcgagccc 43334163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 274
Target Start/End: Complemental strand, 50726144 - 50726106
Alignment:
Q  236 agacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  50726144 agacaggtcttgaatccgagagaattcgggttcgagccc 50726106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 274
Target Start/End: Original strand, 50786704 - 50786742
Alignment:
Q  236 agacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  50786704 agacaggtcttgaatccgagagaattcgggttcgagccc 50786742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 50823681 - 50823718
Alignment:
Q  234 aaagacaggtcttgaatccgagagaacccgggttcgag 271  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  50823681 aaagacaagtcttgaatccgagagaatccgggttcgag 50823718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 50852179 - 50852142
Alignment:
Q  234 aaagacaggtcttgaatccgagagaacccgggttcgag 271  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  50852179 aaagacaagtcttgaatccgagagaatccgggttcgag 50852142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 19723267 - 19723334
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19723267 aactccaaaggtttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 19723334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 4840096 - 4840163
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  4840096 aactccaaaggcttggtctagtggtaaaaagataggttttgaatccgagagaacccgggttcgagccc 4840163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 27881164 - 27881097
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  27881164 aactccaaaggcttggtctagtggtaaaatgacaggtcttgaatctgagagaacccgggttcgagccc 27881097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 28021345 - 28021278
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  28021345 aactccaaaggcttggtctagtggtaaaatgacaggtcttgaatctgagagaacccgggttcgagccc 28021278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 22711465 - 22711525
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggtt 267  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22711465 aactccaaaggtttggtctagtggtaaaaagacaggtcttgaatccgagagaactcgggtt 22711525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 32296815 - 32296748
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||| |||||    
T  32296815 aactccaaaggtttggtctagtggtaaaaagacaggtcttgaatttgagagaacccgggttcaagccc 32296748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 273
Target Start/End: Original strand, 11403957 - 11404023
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagcc 273  Q
    |||||||||| |||||||||||||||||| |||||||||||||| |||||||||| |||||||||||    
T  11403957 aactccaaagacttggtctagtggtaaaatgacaggtcttgaattcgagagaacctgggttcgagcc 11404023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 273
Target Start/End: Original strand, 11610236 - 11610302
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagcc 273  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||| ||||||||    
T  11610236 aactccaaaggtttggtctagtggtaaaaagacaggtcttgaatccgagagatctcggattcgagcc 11610302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 208 - 274
Target Start/End: Complemental strand, 28739736 - 28739670
Alignment:
Q  208 actccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    |||||||||||||||||||||||||||| |||||||||||||| | |||||||| |||||| |||||    
T  28739736 actccaaaggcttggtctagtggtaaaatgacaggtcttgaattctagagaacctgggttcaagccc 28739670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 6097521 - 6097587
Alignment:
Q  208 actccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    |||||||| |||||||||  ||||||||||||||||||||||| |||||||| ||| ||||||||||    
T  6097521 actccaaaagcttggtcttatggtaaaaagacaggtcttgaattcgagagaatccgagttcgagccc 6097587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 24475173 - 24475120
Alignment:
Q  206 gaactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaa 259  Q
    ||||||||||||||||||||||| |||| | |||||||||||||||||| ||||    
T  24475173 gaactccaaaggcttggtctagtagtaagatgacaggtcttgaatccgatagaa 24475120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 30682795 - 30682862
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    |||||||||||||||||||||||||| || | ||| |||||||| | ||||| |||| ||||||||||    
T  30682795 aactccaaaggcttggtctagtggtacaatggcagttcttgaattcaagagagcccgtgttcgagccc 30682862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 274
Target Start/End: Original strand, 29767169 - 29767211
Alignment:
Q  232 aaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    |||||||||||||||||||| ||||||||||||| ||||||||    
T  29767169 aaaaagacaggtcttgaatctgagagaacccggggtcgagccc 29767211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 271
Target Start/End: Original strand, 41553244 - 41553305
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgag 271  Q
    ||||||||||||||| |   ||||||||| || ||||||||||| |||||||||||| |||||||    
T  41553244 aactccaaaggcttgat---gtggtaaaatgataggtcttgaattcgagagaacccgagttcgag 41553305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 207 - 273
Target Start/End: Original strand, 17064279 - 17064345
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagcc 273  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17064279 aactccaaaggcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagcc 17064345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 20983179 - 20983112
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||    
T  20983179 aactccaaaggcttggtctagtgataaaaagacaggtcttgaatccaagagaatccgggttcgagccc 20983112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 35237199 - 35237132
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||| ||||||||||||||||||||||| || | ||||||||| |||||||| | || |||||||||    
T  35237199 aactctaaaggcttggtctagtggtaaaatgatacgtcttgaattcgagagaatctggattcgagccc 35237132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 235 - 274
Target Start/End: Original strand, 37976530 - 37976569
Alignment:
Q  235 aagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  37976530 aagacaggtcttgaatccgagagaacctgggttcgagccc 37976569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 41910793 - 41910834
Alignment:
Q  218 cttggtctagtggtaaaaagacaggtcttgaatccgagagaa 259  Q
    |||| ||||||||||||||||||||||||||||| |||||||    
T  41910793 cttgctctagtggtaaaaagacaggtcttgaatctgagagaa 41910834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 207 - 271
Target Start/End: Complemental strand, 2357251 - 2357187
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgag 271  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2357251 aactccaaaggcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgag 2357187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 6672969 - 6672902
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6672969 aactccaaaggtttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcaagccc 6672902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 40155996 - 40156063
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40155996 aactccaaaggtttggtctagtggtaaaaagacaggtcttgaatccgagagaatccgggttcgagccc 40156063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 5039376 - 5039441
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagc 272  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  5039376 aactccaaaggcttggtatagtggtaaaaagacaggtcttgaatccgagagaactcgggttcgagc 5039441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 44650349 - 44650414
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagc 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  44650349 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgatttcgagc 44650414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 7860322 - 7860255
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||    
T  7860322 aactccaaaggcttggtctagtggtaaaatgacaggtcttgaatccgagagaacctgggtttgagccc 7860255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 10745408 - 10745341
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  10745408 aactccaaaggcttggtttagtggtaaaaagacaggtcttgaattcgagagaacccgggtccgagccc 10745341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 17136343 - 17136410
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||||||||||||    
T  17136343 aactccaaaggcttggtctagtgataaaatgacaggttttgaatctgagagaacccgggttcgagccc 17136410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 207 - 271
Target Start/End: Complemental strand, 2754227 - 2754163
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgag 271  Q
    |||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||    
T  2754227 aacttcaaaggcttggtttagtggtaaaatgacaggtcttgaatccgagagaacccggattcgag 2754163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 25987838 - 25987771
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||||||| |  | ||||||||||||||||||||||||||||||||| |||||||||||||    
T  25987838 aactccaaaggcttgatacaatggtaaaaagacaggtcttgaatccgagagaactcgggttcgagccc 25987771  T

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Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 272
Target Start/End: Complemental strand, 30372862 - 30372791
Alignment:
Q  201 ttgtggaactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagc 272  Q
    |||| |||||||||||| |||||||||||||||||||| ||||||||||| ||||||| || ||||||||||    
T  30372862 ttgtagaactccaaaggtttggtctagtggtaaaaagataggtcttgaattcgagagatcctgggttcgagc 30372791  T

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Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 207 - 271
Target Start/End: Original strand, 26690110 - 26690174
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgag 271  Q
    ||||||||||||||||||||||||||||||||||||| || ||| |||||||| | |||||||||    
T  26690110 aactccaaaggcttggtctagtggtaaaaagacaggttttaaattcgagagaatctgggttcgag 26690174  T

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Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 2099016 - 2098953
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcga 270  Q
    |||||||||||||||||||| |||||||| || ||||||||||| ||||||||||| |||||||    
T  2099016 aactccaaaggcttggtctattggtaaaatgataggtcttgaattcgagagaacccaggttcga 2098953  T

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Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 13047324 - 13047260
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||| |||||||||||||   |||||||||||||||||||||| |||||||| ||||||||||||||    
T  13047324 aactctaaaggcttggtct---ggtaaaaagacaggtcttgaattcgagagaatccgggttcgagccc 13047260  T

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Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 36380308 - 36380248
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggtt 267  Q
    |||| ||||||||||||||||||||||| ||||||||||||||| ||||| ||| ||||||    
T  36380308 aacttcaaaggcttggtctagtggtaaacagacaggtcttgaattcgagaaaactcgggtt 36380248  T

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Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 21637869 - 21637920
Alignment:
Q  223 tctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||||| || ||||||||||| |||||||||||||||| ||||||    
T  21637869 tctagtggtaaaatgataggtcttgaattcgagagaacccgggtttgagccc 21637920  T

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Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 36836479 - 36836441
Alignment:
Q  233 aaaagacaggtcttgaatccgagagaacccgggttcgag 271  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  36836479 aaaagacaggtcttgaatccgagagaacccgagttcgag 36836441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 274
Target Start/End: Complemental strand, 45137109 - 45137079
Alignment:
Q  244 cttgaatccgagagaacccgggttcgagccc 274  Q
    |||||||||||||||||||||||||||||||    
T  45137109 cttgaatccgagagaacccgggttcgagccc 45137079  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 3200847 - 3200903
Alignment:
Q  216 ggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagcc 273  Q
    |||||||||| ||||||||||||||| |||||||||  |||||||| || ||||||||    
T  3200847 ggcttggtct-gtggtaaaaagacagatcttgaatctaagagaacctggattcgagcc 3200903  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 252
Target Start/End: Original strand, 21487106 - 21487151
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatcc 252  Q
    ||||||||||| || ||| |||||||||| ||||||||||||||||    
T  21487106 aactccaaaggtttagtcaagtggtaaaatgacaggtcttgaatcc 21487151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 206 - 274
Target Start/End: Original strand, 15034410 - 15034478
Alignment:
Q  206 gaactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  15034410 gaactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgaaagaacccaggttcgagccc 15034478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 30054618 - 30054551
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  30054618 aactccaaaggcttggtctagtggtaaaaagtcaagtcttgaatccgagagaacccgggttcgagccc 30054551  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 207 - 271
Target Start/End: Original strand, 20014414 - 20014478
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgag 271  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20014414 aactccaaagtcttggtctagtggtaaaaagacagatcttgaatccgagagaacccgggttcgag 20014478  T

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Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 45323962 - 45324029
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||    
T  45323962 aactccaaaggcttggtctagtggtaaaacgacaggtcttgaatccgagagaacctgggttccagccc 45324029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 30370236 - 30370169
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    |||||||||||||||||||||||||||||||||| || |||||| |||||||| ||||||||||||||    
T  30370236 aactccaaaggcttggtctagtggtaaaaagacaagttttgaattcgagagaatccgggttcgagccc 30370169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 21090074 - 21090138
Alignment:
Q  210 tccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||  |||||||||||||    
T  21090074 tccaaaggcttggtctagtggtaaaatgacaggtcttgaattcgagagaattcgggttcgagccc 21090138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 12025137 - 12025204
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    |||||||||| ||||||||||||||||||| |||| |||||||| |||||||||| ||||||||||||    
T  12025137 aactccaaagacttggtctagtggtaaaaatacagatcttgaattcgagagaacctgggttcgagccc 12025204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 274
Target Start/End: Original strand, 4573359 - 4573402
Alignment:
Q  231 taaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  4573359 taaaaagacaggtcttgaatccgagagaacccgggttcgagccc 4573402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 33763430 - 33763363
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||| ||||| |||||||||| ||||||||||||||||||||| |||||||| |  |||||||||||    
T  33763430 aactctaaaggtttggtctagtagtaaaaagacaggtcttgaattcgagagaatctaggttcgagccc 33763363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 35617942 - 35617990
Alignment:
Q  213 aaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacc 261  Q
    ||||| ||||||||||||||||| |||||||||||||||| ||||||||    
T  35617942 aaaggtttggtctagtggtaaaatgacaggtcttgaatccaagagaacc 35617990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 35163926 - 35163859
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35163926 aacttcaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaaccagggttcgagccc 35163859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 14496311 - 14496375
Alignment:
Q  210 tccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14496311 tccaaaggtttggtctagtggtaaaaagaaaggtcttgaatccgagagaacccgggttcgagccc 14496375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 2711910 - 2711843
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||| |||||| || |||||||||    
T  2711910 aactcgaaaggcttggtctagtggtaaaatgacaggtcttgaatccgatagaacctggattcgagccc 2711843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 213 - 274
Target Start/End: Complemental strand, 19686997 - 19686936
Alignment:
Q  213 aaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||| |||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||    
T  19686997 aaaggtttggtctagtggtaaaaaaacaggtcttgaatctgagagaacctgggttcgagccc 19686936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 14505698 - 14505632
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    ||||||||||||||||||||| |||||||| ||| || |||||||||||||| ||||  |||||||||    
T  14505698 aactccaaaggcttggtctagaggtaaaaaaacaagt-ttgaatccgagagatcccgaattcgagccc 14505632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 107867 - 107800
Alignment:
Q  207 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 274  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  107867 aactccaaagacttggtctagtggtaaaaagacaggtcttgaattcgagagaacccgagttcgagccc 107800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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