View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13076_low_39 (Length: 246)
Name: NF13076_low_39
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13076_low_39 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 38093114 - 38092873
Alignment:
| Q |
1 |
ggaaattttgcaacaagaacaaatattcctggatcccacaatttgaatgaagatcttgttctcatagacgtatcaaattgtccgaaggaatcccattgtt |
100 |
Q |
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| T |
38093114 |
ggaaattttgcaactagaacaaatattcgtggatcccacaatttgaatgaagatcttgttctcatagacgtatcgaattgtccgaaggaatcccattgtt |
38093015 |
T |
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| Q |
101 |
tccttttt-ccaatatttctcattcaagaaaacaacatatagggtttctttccttctgcaccctttgagtcaattctgcatgctttgttgtctccattag |
199 |
Q |
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| T |
38093014 |
tccttttttccaatatttctcattcaagaaaacaacatatagggtttcttg-----tgcaccctttgagtcaattctgcatgctttgttgtctccattag |
38092920 |
T |
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| Q |
200 |
ccttgaccccaacagttcatgtacataaatttcttaagagaatcatc |
246 |
Q |
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| T |
38092919 |
ccctgaccccaacagttcatgtacataactttctgaagagaatcatc |
38092873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 38089937 - 38089887
Alignment:
| Q |
196 |
ttagccttgaccccaacagttcatgtacataaatttcttaagagaatcatc |
246 |
Q |
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| T |
38089937 |
ttagccttgaccccaacaattcatgtacataactttctggagagaatcatc |
38089887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 38096191 - 38096141
Alignment:
| Q |
196 |
ttagccttgaccccaacagttcatgtacataaatttcttaagagaatcatc |
246 |
Q |
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| T |
38096191 |
ttagccttgaccccagcaattcatgtacataactttccgaagagaatcatc |
38096141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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