View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13076_low_4 (Length: 614)
Name: NF13076_low_4
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13076_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 544; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 1 - 592
Target Start/End: Original strand, 49516853 - 49517444
Alignment:
| Q |
1 |
acagatgaccacttgtgtgaatagtatgcttaaccttggggtaaatcttcaagatggagtcagttcaatggtcattatactatacttgttacctatagga |
100 |
Q |
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| T |
49516853 |
acagatgaccacttgtgtgaatagtatgcttaaccttggggtaaatcttcaagatggagtcagttcaatggtcattatactatactttttacctatagga |
49516952 |
T |
|
| Q |
101 |
attatgttgttgcatccttgctggagcagcatccgccaatagattatgttaaacataataaggtccacaattgtgaaaagtaactacaagaatcttggat |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
49516953 |
attatgttgttgcatccttgctggagcagcatccaccaatagattatgttaaacataataaggtccacaattgtgaaaagtaactacaagagtattggat |
49517052 |
T |
|
| Q |
201 |
taaacaaaagtcattgttcattccattccactagcagctgcttgtattctgaataatacctctttccttaatcttgcaaggccttcccttagtcatggtt |
300 |
Q |
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| T |
49517053 |
taaacaaaagtcattgttcattccattccactagcagctgcttgtattctaaataatacctcttaccttaatcttgcaaggccttcccttagtcatggtt |
49517152 |
T |
|
| Q |
301 |
cacacttcacagaaaagcttgtgctttactaggggaagccttcagaaacatcttacgccctcgtttctccaatttaatggataaatttcaaaattaggct |
400 |
Q |
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| T |
49517153 |
cacacttcacagaaaagcttgtgctttactaggggaagccttcagaaacatcttacgccctcgtttctccaatttaatagataaatttcaaaattaggct |
49517252 |
T |
|
| Q |
401 |
caatatcccctgaaccagcttaccttgtgcgcaacataccttttgtcattgttttatcattcaatgcaatttctttttgcattggaaatataatcaatcc |
500 |
Q |
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| T |
49517253 |
caatatcccctgaaccagcttaccttgtgtgcaacataccttttgtcgttgttttatcattcaatgcaatttttttttgcgttggaaatataatcaatcc |
49517352 |
T |
|
| Q |
501 |
ttcagtaatctatgtctgtaaatatccatgtcatgcacatacatataagctgactagttgcaaactctctttataacatgcttaagtgtgcg |
592 |
Q |
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| T |
49517353 |
ttcagtgatctatgtctgtaaatatccatgtcatgcacatacatataagctgactagttgcaaactctctttataacatgcttaagtgtgcg |
49517444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 49515584 - 49515509
Alignment:
| Q |
59 |
gtcagttcaatggtcattatactatacttgttacctataggaattatgttgttgcatccttgctggagcagcatcc |
134 |
Q |
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| T |
49515584 |
gtcagtttgatggtcattatattatacttgttgcttatatgaattatgttgttgcatacttgtcggagcagcatcc |
49515509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 27746553 - 27746603
Alignment:
| Q |
253 |
ataatacctctttccttaatcttgcaaggccttcccttagtcatggttcac |
303 |
Q |
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| T |
27746553 |
ataatacccctttccttcatcttgcaaggccttcccttaatcatggttcac |
27746603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 22990312 - 22990259
Alignment:
| Q |
68 |
atggtcattatactatacttgttacctataggaattatgttgttgcatccttgc |
121 |
Q |
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| T |
22990312 |
atggtaattatattatacttgttgcctatatgagttatgttgatgcatccttgc |
22990259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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