View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13076_low_41 (Length: 230)
Name: NF13076_low_41
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13076_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 74 - 217
Target Start/End: Complemental strand, 25738631 - 25738488
Alignment:
| Q |
74 |
ttttcacgcagaaatggaagagtgaaaaaggagacattgacagaggatgttgagttcacgatcattagcaggatctttcaaaaccttaacgaggtcgttg |
173 |
Q |
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| T |
25738631 |
ttttcacgcagaaatggaagagtgaaaaaggagacattgacagaggatgttgagttcacgatcattagcaggatctttcaaaaccttaacgaggtcgttg |
25738532 |
T |
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| Q |
174 |
cttatggagatcaggtcattcacgtcgaaatttctagaataatc |
217 |
Q |
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| T |
25738531 |
cttatggagatcagatcattcacgtcgaaatttctagaataatc |
25738488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 74 - 217
Target Start/End: Complemental strand, 25745040 - 25744898
Alignment:
| Q |
74 |
ttttcacgcagaaatggaagagtgaaaaaggagacattgacagaggatgttgagttcacgatcattagcaggatctttcaaaaccttaacgaggtcgttg |
173 |
Q |
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| T |
25745040 |
ttttcaagcagaaatggaagagtaaaaaggaagagagaaa-agaggatgttgagttcacgatcattaggaggatctttcaaacccttaacgaggtcgtta |
25744942 |
T |
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| Q |
174 |
cttatggagatcaggtcattcacgtcgaaatttctagaataatc |
217 |
Q |
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| T |
25744941 |
cttatggagatcaggtcattcacatcgaagtttctagaataatc |
25744898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 103 - 217
Target Start/End: Original strand, 45304923 - 45305037
Alignment:
| Q |
103 |
ggagacattgacagaggatgttgagttcacgatcattagcaggatctttcaaaaccttaacgaggtcgttgcttatggagatcaggtcattcacgtcgaa |
202 |
Q |
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| T |
45304923 |
ggagacattgagagatgatgttgagatcacggtcattagcgggatcttgcaaaacctcaatgaggtcgttgcttatggaaataagctgatccacgtcgaa |
45305022 |
T |
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| Q |
203 |
atttctagaataatc |
217 |
Q |
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||||||||| |||| |
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| T |
45305023 |
gtttctagaagaatc |
45305037 |
T |
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