View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13076_low_43 (Length: 225)
Name: NF13076_low_43
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13076_low_43 |
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| [»] scaffold0048 (1 HSPs) |
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Alignment Details
Target: scaffold0048 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 75834 - 76033
Alignment:
| Q |
11 |
aagcaaaggggaaggtcagagatgatcaaaatagtaaggaaatatattaagttagttaaggataagaagattatgacattaatagtgtaaatggtgtgat |
110 |
Q |
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| T |
75834 |
aagcaacggggaaggtcagagaagataaaaatagcaaggaaatatattaagttagttaaggatagaaagattatgacattaatagtgtaaatggtgtgat |
75933 |
T |
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| Q |
111 |
tacacggtgaatcttaaagcatgaattggttaatatggtggacaacaatataagaagagatatggggtgatggtttagaatagtggaggatgatataggt |
210 |
Q |
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| T |
75934 |
tacacggtgaatcttaaagcatgaattggttaatatggtggacaacaatataagaagagatatggggtgatggtttagaatagtggaggatgatgtaggt |
76033 |
T |
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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 85 - 210
Target Start/End: Complemental strand, 21494969 - 21494845
Alignment:
| Q |
85 |
gacattaatagtgtaaatggtgtgattacacggtgaatcttaaagcatgaattggttaatatggtggacaacaat-ataagaagagatatggggtgatgg |
183 |
Q |
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|||||||| |||||| |||||||| |||||| |||| | |||| ||||||| ||||||||||||| || || || ||||||||||||||| ||||||| |
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| T |
21494969 |
gacattaacagtgtagatggtgtggttacacagtgagt--taaaacatgaataggttaatatggtgaacgacgattataagaagagatatgtagtgatgg |
21494872 |
T |
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| Q |
184 |
tttagaatagtggaggatgatataggt |
210 |
Q |
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| T |
21494871 |
tttagaatagtggaggatgatgtaggt |
21494845 |
T |
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