View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13076_low_6 (Length: 602)
Name: NF13076_low_6
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13076_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 11 - 583
Target Start/End: Complemental strand, 51912907 - 51912336
Alignment:
| Q |
11 |
acatcatcaaagttaacaatacttccttctcaattattactaattaccggttatttccaaatgtcttattccaaacgttattgagcttgaatgaccacta |
110 |
Q |
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| T |
51912907 |
acatcatcaaagttaacaatacttccttctcaattattactaattaccggttatttccaaatgtcttattccaaacgttattgagcttgaatgaccacta |
51912808 |
T |
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| Q |
111 |
attggtgtaccgaatgaagagtcatttcccgtgtgtcctgcctgtgctctgtgctctgtgtgtgtcagttatgcagaaagnnnnnnnnggcagctcacac |
210 |
Q |
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| T |
51912807 |
attggtgtaccgaatgaagagtcatttcccgtgtgtcctgcctgtgctctgtgctctgtgtgtgtcagttatgcagaaa-aaaaaaaaggcagctcacac |
51912709 |
T |
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| Q |
211 |
tcactcacacccctcacttattttcctgccgtgcacccaatttgattatttcatcgatcatcaaatttcatgtaggaccactaagattgaaaacttgagg |
310 |
Q |
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| T |
51912708 |
tcactcacacccctcacttattttcctgccgtgcacccaatttgattatttcatcgatcatcaaatttcatgtaggaccactaagattgaaaacttgagg |
51912609 |
T |
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| Q |
311 |
tgaaaataattaataagacaaaaaacaagacacnnnnnnnnnnnnnnnnnnggcagataaaaacactattcttatcatgattttaggaaactagcagaac |
410 |
Q |
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| T |
51912608 |
tgaaaataattaataagacaaaaaacaagacacttttttcttttctcttttggcagataaaaacactattcttatcatgattttaggaaactagcagaac |
51912509 |
T |
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| Q |
411 |
tcacgatctgtcatacaactcaacagcctttagcaatcaaagtctgtgaaatcaaacactaaaagcaaggtgattcaagcacctaatattggacaatgca |
510 |
Q |
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| T |
51912508 |
tcacgatctgtcatacaactcaacagcctttagcaatcaaagtctgtgaaatcaaacactaaaagcaaggtgattcaagcacctaatattggacaatgca |
51912409 |
T |
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| Q |
511 |
cacaacaaaggatgaaatggaacttatcatacccaaaattacaacttccaaaccgagctattacatttgcttc |
583 |
Q |
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| T |
51912408 |
cacaacaaaggatgaaatggaacttatcatacccaaaattacaacttccaaaccgagctattacatttgcttc |
51912336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 526 - 583
Target Start/End: Complemental strand, 5692942 - 5692885
Alignment:
| Q |
526 |
aatggaacttatcatacccaaaattacaacttccaaaccgagctattacatttgcttc |
583 |
Q |
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| T |
5692942 |
aatggaacttatcatacccaaaattacaacctagaaaaggagctatttcatttgcttc |
5692885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 497
Target Start/End: Complemental strand, 5963685 - 5963627
Alignment:
| Q |
439 |
tttagcaatcaaagtctgtgaaatcaaacactaaaagcaaggtgattcaagcacctaat |
497 |
Q |
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| T |
5963685 |
tttagaaatcgaagtatatgaaatcaaacactaaaagaaaggtgattgaagcatctaat |
5963627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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