View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13076_low_7 (Length: 531)

Name: NF13076_low_7
Description: NF13076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13076_low_7
NF13076_low_7
[»] chr2 (5 HSPs)
chr2 (111-325)||(17124260-17124473)
chr2 (428-521)||(17124571-17124664)
chr2 (23-64)||(17124126-17124167)
chr2 (216-321)||(42990152-42990257)
chr2 (80-112)||(17124198-17124230)
[»] chr1 (2 HSPs)
chr1 (203-319)||(5229489-5229605)
chr1 (428-519)||(5229724-5229815)
[»] chr4 (1 HSPs)
chr4 (429-519)||(52550543-52550633)
[»] chr8 (1 HSPs)
chr8 (217-304)||(5450729-5450816)
[»] chr5 (2 HSPs)
chr5 (243-306)||(8142421-8142484)
chr5 (84-128)||(27144484-27144528)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 111 - 325
Target Start/End: Original strand, 17124260 - 17124473
Alignment:
Q  111 gtgtctgtggttcataggatagagcagagttttgccatttacattgatccacctagctcaatgatccagacaaaaacaaattctcatagataatgtttgt 210  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17124260 gtgtccgtggttcataggatagagcagagttttgccatttacattgatcc-cctagctcaatgattcagacaaaaacaaattctcatagataatgtttgt 17124358  T
Q  211 tgatgcagatgtggccagatttaatacaaaaggctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaaccttctcaagg 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17124359 tgatgcagatgtggccagatttaatacaaaaggctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaaccttctcaagg 17124458  T
Q  311 aaaagtaataaatga 325  Q
    |||||||||||||||    
T  17124459 aaaagtaataaatga 17124473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 428 - 521
Target Start/End: Original strand, 17124571 - 17124664
Alignment:
Q  428 cagtattactttgaagatagatttgacttggttaagttcatcaaagtggttcaacaagctggactttatgttcatttgcgtattggtccctatg 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17124571 cagtattactttgaagatagatttgacttggttaagttcatcaaagtggttcaacaagctggactttatgttcatttgcgtattggtccctatg 17124664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 17124126 - 17124167
Alignment:
Q  23 cgtgtcacggatacagatactgataccggacaccacacggac 64  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  17124126 cgtgtcacggatacggatactgataccggacaccacacggac 17124167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 321
Target Start/End: Complemental strand, 42990257 - 42990152
Alignment:
Q  216 cagatgtggccagatttaatacaaaaggctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaaccttctcaaggaaaag 315  Q
    ||||||||||||||| | ||||| || ||||| || || ||| | ||||||||| | || ||||| ||||||||||||||||||||||| |  || ||||    
T  42990257 cagatgtggccagatcttatacagaaagctaaggaaggtggtttggatgtgattcagacttatgttttttggaatggacatgaaccttcacctggcaaag 42990158  T
Q  316 taataa 321  Q
    ||||||    
T  42990157 taataa 42990152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 17124198 - 17124230
Alignment:
Q  80 gagaaaattacataattaagtgaaattatatgt 112  Q
    |||||||||||||||||||||| ||||||||||    
T  17124198 gagaaaattacataattaagtgtaattatatgt 17124230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 203 - 319
Target Start/End: Original strand, 5229489 - 5229605
Alignment:
Q  203 atgtttgttgatgcagatgtggccagatttaatacaaaaggctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaacct 302  Q
    |||||| || ||||||||||||||||| ||| | ||||||||||||||||||||  ||||||| ||| |||| ||||||||||||||||||||||| |||    
T  5229489 atgtttcttaatgcagatgtggccagacttatttcaaaaggctaaagatggaggccttgatgttattcaaacatatgtattttggaatggacatgagcct 5229588  T
Q  303 tctcaaggaaaagtaat 319  Q
    ||||  ||||| |||||    
T  5229589 tctcctggaaatgtaat 5229605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 428 - 519
Target Start/End: Original strand, 5229724 - 5229815
Alignment:
Q  428 cagtattactttgaagatagatttgacttggttaagttcatcaaagtggttcaacaagctggactttatgttcatttgcgtattggtcccta 519  Q
    ||||||||||| |||||||||||||||||||| |||||  ||||  | |  ||||||||||| ||||||||||| |||||||||||||||||    
T  5229724 cagtattacttcgaagatagatttgacttggtaaagtttgtcaagctagcacaacaagctggtctttatgttcacttgcgtattggtcccta 5229815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 429 - 519
Target Start/End: Complemental strand, 52550633 - 52550543
Alignment:
Q  429 agtattactttgaagatagatttgacttggttaagttcatcaaagtggttcaacaagctggactttatgttcatttgcgtattggtcccta 519  Q
    ||||||| ||||||||||| |  || ||||||||||||||||| ||||| ||||||||||| |||||||||||| | || |||||||||||    
T  52550633 agtattattttgaagataggtacgatttggttaagttcatcaaggtggtgcaacaagctgggctttatgttcatcttcgcattggtcccta 52550543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 217 - 304
Target Start/End: Original strand, 5450729 - 5450816
Alignment:
Q  217 agatgtggccagatttaatacaaaaggctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaaccttc 304  Q
    |||||||||||||| | || || ||||||||||| |||||  | ||||||||| |||||||||| || ||||||||||||||||||||    
T  5450729 agatgtggccagatcttatccagaaggctaaagaaggaggattggatgtgattcaaacctatgttttctggaatggacatgaaccttc 5450816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 8142484 - 8142421
Alignment:
Q  243 gctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaaccttctc 306  Q
    |||||||| |||||| | ||||| |||||||||||||| ||||||||||  |||||||||||||    
T  8142484 gctaaagaaggaggtttggatgtaattgaaacctatgtgttttggaatgttcatgaaccttctc 8142421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 27144484 - 27144528
Alignment:
Q  84 aaattacataattaagtgaaattatatgtgtctgtggttcatagg 128  Q
    |||| |||||||| |||| ||||||||||||||||| ||||||||    
T  27144484 aaatcacataatttagtgtaattatatgtgtctgtgcttcatagg 27144528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University