View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13077_high_2 (Length: 493)
Name: NF13077_high_2
Description: NF13077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13077_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 20 - 484
Target Start/End: Complemental strand, 47712837 - 47712373
Alignment:
| Q |
20 |
cggttgactcttcatttgatagggcgacattgttgtgtgagagtatcgcaaagaggatttttcctagggaggagtatgaaggtgtggaggaggctcatta |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47712837 |
cggttgactcttcatttgatagggcgacattgttgtgtgagagtatcgcgaagaggatttttcctagggaggagtatgaaggtgtggaggaggcgcatta |
47712738 |
T |
|
| Q |
120 |
tgcttatagggttcgtgatcgtttgaggaaggatgtgttggtgccgttgaggaaggttttggagttgcctgaggtgtttattggggctaatcgatggaaa |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712737 |
tgcttatagggttcgtgatcgtttgaggaaggatgtgttggtgccattgaggaaggttttggagttgcctgaggtgtttattggggctaatcgatggaaa |
47712638 |
T |
|
| Q |
220 |
ttgattccttacaacagggttgcgtctgtggcgatggagttttataaagagaagtttttgaagcatgataaaaagaggtttgagaagtatttggaggatg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712637 |
ttgattccttacaacagggttgcgtctgtggcgatggagttttataaagagaagtttttgaagcatgataaaaagaggtttgagaagtatttggaggatg |
47712538 |
T |
|
| Q |
320 |
tgaaagtggggaagactacgatcgctgctggtgctttgcttcctcatgacattattcggtcgttgggggatggagatggtggagaggtggcggagttaca |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712537 |
tgaaagtggggaagactacgatcgctgctggtgctttgcttcctcatgatattattcggtcgttgggggatggagatggtggagaggtggcggagttaca |
47712438 |
T |
|
| Q |
420 |
gtggacgagaatggtggatgatttgctcaagaaagggaagatgaggaattgtcttgctgtctgtg |
484 |
Q |
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| T |
47712437 |
gtggacgagaatggtggatgatttgctcaagaaagggaagatgaggaattgtcttgctgtgtgtg |
47712373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 53 - 476
Target Start/End: Original strand, 19785682 - 19786105
Alignment:
| Q |
53 |
tgtgtgagagtatcgcaaagaggatttttcctagggaggagtatgaaggtgtggaggaggctcattatgcttatagggttcgtgatcgtttgaggaagga |
152 |
Q |
| |
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||||||||||||| ||||||||||| || ||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
19785682 |
tgtgtgagagtattgcaaagaggatcttccctcgggaggaatatgaaggtgtggaggaggcacattatgcttatagggttcgtgatcgtttgaggaaaga |
19785781 |
T |
|
| Q |
153 |
tgtgttggtgccgttgaggaaggttttggagttgcctgaggtgtttattggggctaatcgatggaaattgattccttacaacagggttgcgtctgtggcg |
252 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||| |||||||||||||| || ||||| ||||||||| |
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| T |
19785782 |
tgtgttggtgccgttgaggaaggtgttggagttgcctgaggtgtttattggtgctaatcaatggggtttgattccttacaatagagttgcttctgtggcg |
19785881 |
T |
|
| Q |
253 |
atggagttttataaagagaagtttttgaagcatgataaaaagaggtttgagaagtatttggaggatgtgaaagtggggaagactacgatcgctgctggtg |
352 |
Q |
| |
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||| |||||||||| || |||||||||||||||||||| |||||||||||||||| ||| |||||||||| | || |||||||| || |||||||||| |
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| T |
19785882 |
atgaagttttataaggaaaagtttttgaagcatgataaggagaggtttgagaagtacttgaaggatgtgaaggcaggaaagactactattgctgctggtg |
19785981 |
T |
|
| Q |
353 |
ctttgcttcctcatgacattattcggtcgttgggggatggagatggtggagaggtggcggagttacagtggacgagaatggtggatgatttgctcaagaa |
452 |
Q |
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||||||||||||| | ||||| ||| ||||||||||||||||||||||| || || ||||| ||||||| |||||| || ||||||||||||||||| |
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| T |
19785982 |
ctttgcttcctcaccagattatagagtctttgggggatggagatggtggagaagttgctgagttgcagtggaagagaattgttgatgatttgctcaagaa |
19786081 |
T |
|
| Q |
453 |
agggaagatgaggaattgtcttgc |
476 |
Q |
| |
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||| ||||||| ||||||||||| |
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| T |
19786082 |
aggaaagatgaaaaattgtcttgc |
19786105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 53 - 484
Target Start/End: Complemental strand, 19795905 - 19795474
Alignment:
| Q |
53 |
tgtgtgagagtatcgcaaagaggatttttcctagggaggagtatgaaggtgtggaggaggctcattatgcttatagggttcgtgatcgtttgaggaagga |
152 |
Q |
| |
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||||||||| || || |||| ||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || |
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| T |
19795905 |
tgtgtgagaccattgccaagaagatcttccctagggaggagtatgaaggtgtggaggaggcacattatgcttatagggttcgtgatcggttgaggaaaga |
19795806 |
T |
|
| Q |
153 |
tgtgttggtgccgttgaggaaggttttggagttgcctgaggtgtttattggggctaatcgatggaaattgattccttacaacagggttgcgtctgtggcg |
252 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||| |||||||| ||||| |||||||| ||||||||| |
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| T |
19795805 |
tgtgttggtgccgttgaggaaggtgttggagttgcctgaggtgtttattggtgctaatcaatggggtttgattccatacaatagggttgcttctgtggcg |
19795706 |
T |
|
| Q |
253 |
atggagttttataaagagaagtttttgaagcatgataaaaagaggtttgagaagtatttggaggatgtgaaagtggggaagactacgatcgctgctggtg |
352 |
Q |
| |
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||| |||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||| | ||||||||||| || |||||||||| |
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| T |
19795705 |
atgaagttttataaggagaagtttttgaagcatgataaggagaggtttgagaagtacttggaggatgtgaaggcagggaagactactattgctgctggtg |
19795606 |
T |
|
| Q |
353 |
ctttgcttcctcatgacattattcggtcgttgggggatggagatggtggagaggtggcggagttacagtggacgagaatggtggatgatttgctcaagaa |
452 |
Q |
| |
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||||||||||||| || ||||| ||| |||| |||| |||||||||||| ||||| ||||| ||||||| |||||| || ||||||||||||||||| |
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| T |
19795605 |
ctttgcttcctcacgagattatagagtctttggatgatgaagatggtggagaagtggctgagttgcagtggaagagaattgttgatgatttgctcaagaa |
19795506 |
T |
|
| Q |
453 |
agggaagatgaggaattgtcttgctgtctgtg |
484 |
Q |
| |
|
|| || |||||||||||||||||||| |||| |
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|
| T |
19795505 |
gggaaaaatgaggaattgtcttgctgtgtgtg |
19795474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 208; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 53 - 476
Target Start/End: Complemental strand, 15835212 - 15834789
Alignment:
| Q |
53 |
tgtgtgagagtatcgcaaagaggatttttcctagggaggagtatgaaggtgtggaggaggctcattatgcttatagggttcgtgatcgtttgaggaagga |
152 |
Q |
| |
|
||||||||| || || |||||||| || ||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
15835212 |
tgtgtgagaccattgccaagaggatattccctcgggaggaatatgaaggtgtggaggaggcgcattatgcttatagggttcgtgatcgtttgaggaaaga |
15835113 |
T |
|
| Q |
153 |
tgtgttggtgccgttgaggaaggttttggagttgcctgaggtgtttattggggctaatcgatggaaattgattccttacaacagggttgcgtctgtggcg |
252 |
Q |
| |
|
||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||| |||| ||||||||||| || |||||||| |||||||| |
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|
| T |
15835112 |
tgtgttggtgccgttgaggaaggcgttgcaattgcctgaggtgtttattggggctaatcaatggggtttgattccttataatagggttgcttctgtggcc |
15835013 |
T |
|
| Q |
253 |
atggagttttataaagagaagtttttgaagcatgataaaaagaggtttgagaagtatttggaggatgtgaaagtggggaagactacgatcgctgctggtg |
352 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||| | |||||||||||||||| ||| |||||||||| | ||||||||||| || |||||||||| |
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|
| T |
15835012 |
atggagttttataaggagaagtttttgaagcatgatgaggagaggtttgagaagtacttgcaggatgtgaaggcagggaagactactatggctgctggtg |
15834913 |
T |
|
| Q |
353 |
ctttgcttcctcatgacattattcggtcgttgggggatggagatggtggagaggtggcggagttacagtggacgagaatggtggatgatttgctcaagaa |
452 |
Q |
| |
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|||||||||||||| | ||||| ||| || | ||||| |||||||||| |||| ||||| ||||||| |||||| || ||||||||||||||||| |
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| T |
15834912 |
ctttgcttcctcataagattataaagtcttttttgaatggatatggtggagaagtggatgagttgcagtggaagagaattgttgatgatttgctcaagaa |
15834813 |
T |
|
| Q |
453 |
agggaagatgaggaattgtcttgc |
476 |
Q |
| |
|
||| ||||||| ||||||||||| |
|
|
| T |
15834812 |
aggaaagatgaaaaattgtcttgc |
15834789 |
T |
|
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