View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13077_low_1 (Length: 701)
Name: NF13077_low_1
Description: NF13077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13077_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 207 - 686
Target Start/End: Complemental strand, 40285084 - 40284605
Alignment:
| Q |
207 |
ttattgttggttagcactgccttgtctcacaaaggggtaaggtttatgaatctgttatagtgttaagattcctttgttaatctttcaaagaaaccattgt |
306 |
Q |
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| T |
40285084 |
ttattgttggttagcattgccttgtctcacaaaggggtaaggtttatgaatctgttatagtgttaagattcctttgttaatctttcaaagaaaccattgt |
40284985 |
T |
|
| Q |
307 |
aaggtttattttttcgtccttgcactgcaagtaatttggctacagaaggttgaatcacaaaagtgaaatgtattgactctaccaatgactatattgaaca |
406 |
Q |
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| T |
40284984 |
aaggtttattttttcgtccttgcactgcaagtaatttggctacagaaggttgaatcacaaaagtgaaatgcattgactctaccaatgactatattgaaca |
40284885 |
T |
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| Q |
407 |
tttcaattagaagacaatgagacattggtaaaaacaaaatagacattaaaaataatcattacaggaactacaccgaagaatgaggtacttgcttatatag |
506 |
Q |
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| T |
40284884 |
tttcaattagaagacaatgagacattggtaaaaacaaaatagacattaaaaataatcgttacaggaactacactgaagaatgaggtacttgcttatatag |
40284785 |
T |
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| Q |
507 |
tgatgtcttcaannnnnnnggtaccattcattacaccattcacatctttgttaaagttttgtaaaaagtcatttaaaaatgatttcaagaactgcaacaa |
606 |
Q |
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| T |
40284784 |
cgatgtcttcaatttttttggtaccattcattacaccattcacatttttgttaaagttttgcaaaaagtcatttaaaaatgatttcaagaactgcatcaa |
40284685 |
T |
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| Q |
607 |
tatgacctcatactttatttccgtagaaaatcataacaaagtttgtatccgtatttgatatgactaagggactcgcacag |
686 |
Q |
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| T |
40284684 |
tatgacctcatactttatttccgtagaaaatcataacaaagtttgtatccgtatttgatatgactaagggactcgcacag |
40284605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 40285223 - 40285072
Alignment:
| Q |
19 |
caatgtactttcagggtcacttgctggccatgacaagagaaatgtttattcttacaaaatagaatacatcaaaggaacaatgagcacatctctcctaaat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||| |
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| T |
40285223 |
caatgtactttcagggtcacttgctggccatgacaagagaaatgtttattcttacaaaatagaatgcaacaaaggaacaatgagcacgtctctcctaaat |
40285124 |
T |
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| Q |
119 |
tcaaggataaagcttgtgttttttacattttacttactcttattgtttgtta |
170 |
Q |
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| T |
40285123 |
tcaaggataaagcttgtgttttttacattttacttactcttattgttggtta |
40285072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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