View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13077_low_3 (Length: 331)
Name: NF13077_low_3
Description: NF13077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13077_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 43367240 - 43367042
Alignment:
| Q |
1 |
taactacaacacatattcatctcattcttcttctacctctaattccatgcatttgtcgtaactgtaattgcaaacacaattataa---------taatca |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
43367240 |
taactacaacacatattcatctcattcttcttctacctctaattccatgcatttgtcgtaactgtaattgcaaacacaattataataataataataatca |
43367141 |
T |
|
| Q |
92 |
ataacgtacattacattactccatgcattacatattaatatcatcactagctaacacatat--------atacatacaccaaactgtaattaatattcat |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43367140 |
ataacgtacattacattactccatgcattacatat---tatcatcactagctaacacatatatacatacatacatacaccaaactgtaattaatattcat |
43367044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 219 - 331
Target Start/End: Complemental strand, 43367016 - 43366904
Alignment:
| Q |
219 |
tgatgcatacaccatcatcagtgaagagaaagaagacagacaagtccagaagactcatcggactccttcttgccagtttcctccgccgtcgtctcattca |
318 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43367016 |
tgatgcataaaccatcatcagtgaagagaaagaagacagacaagtccagaagactcatcggactccttctttccagtttcctccgccgtcgtctcattca |
43366917 |
T |
|
| Q |
319 |
ccgcctcctcatt |
331 |
Q |
| |
|
|||||||||||| |
|
|
| T |
43366916 |
tcgcctcctcatt |
43366904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University