View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13078_low_1 (Length: 585)
Name: NF13078_low_1
Description: NF13078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13078_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 399
Target Start/End: Complemental strand, 38608987 - 38608607
Alignment:
| Q |
19 |
attagctctctatggatatgctacgttgttcnnnnnnncctagtagttatttattctcatatcgtttcttaggttgcatatattgagggtgacttgttta |
118 |
Q |
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| T |
38608987 |
attagctctgtatggatatgctacgttgttctttttttcctagtagttatttattctcatatcgtttcttaggttgcatatattgagggtgacttgttta |
38608888 |
T |
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| Q |
119 |
aaccgaacactgtatgttctagttaggttgcatgtgatgaggctggctggcttgtttaaactaaggaatgtacgttctagtttagttgtacagaagctta |
218 |
Q |
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| T |
38608887 |
aaccgaacaatgtatgttctagttaggttgcatgtgatgaggctggctggcttgtttaaactaaggaatgtacgttctagttaagttgtacagaagctta |
38608788 |
T |
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| Q |
219 |
acgagttcatattgatttgttcaattcaggaatctaaaaaggagaagagcagtgactttaaatatgatgggcctggatggattattcttgctgtagggat |
318 |
Q |
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| T |
38608787 |
acgagttcatattgatcttttcaattcaggaatctaaaaaggagaagagcagtgactttaaatatgacgggcctggatggattattcttgcagtagggat |
38608688 |
T |
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| Q |
319 |
agtagcatgtgcgatattattctcaaaattatcggtgaaagacaattcattttaggttgaagttgtgaaacaaagtattgt |
399 |
Q |
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| T |
38608687 |
agtagcatgtgcgatattattctcaaaattatcagtgaaagacaattcattttaggttgaagttgtgaaacaaagtattgt |
38608607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 455 - 568
Target Start/End: Complemental strand, 38608495 - 38608381
Alignment:
| Q |
455 |
aaatagattcgtgatttacacctttaaaattcactttagaactactcttt-cttaattttctttatctctcattttcaatagatggtgaaaatttcaata |
553 |
Q |
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| T |
38608495 |
aaatagattcgtgatttacacctttaaaattcactttagaactactcttttcttaattttctttatctctcattttcaatagatggtgaaaatttcaata |
38608396 |
T |
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| Q |
554 |
gattattacgtcaca |
568 |
Q |
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| T |
38608395 |
gattattacgtcaca |
38608381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 237 - 327
Target Start/End: Complemental strand, 38603625 - 38603535
Alignment:
| Q |
237 |
gttcaattcaggaatctaaaaaggagaagagcagtgactttaaatatgatgggcctggatggattattcttgctgtagggatagtagcatg |
327 |
Q |
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| T |
38603625 |
gttcatttcaggaatctaaaaagcagaagagcagtgagtttacatatgacttgcttggatgggctattcttgcagcaggtatagtagcatg |
38603535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 439
Target Start/End: Complemental strand, 38608553 - 38608514
Alignment:
| Q |
400 |
aattctcaacctcttgaatcattgttcctaataattgtga |
439 |
Q |
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| T |
38608553 |
aattctcaacctcttgaatcattgttcctaatagttgtga |
38608514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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