View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13078_low_2 (Length: 418)
Name: NF13078_low_2
Description: NF13078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13078_low_2 |
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| [»] scaffold0317 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 111 - 408
Target Start/End: Original strand, 54425164 - 54425451
Alignment:
| Q |
111 |
gaccaatttgatattttatagttatatatgaaactctacaaaaac--ccgtgcatcgcacgtgttggattggagtctaaaaatgatctatctattactag |
208 |
Q |
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| T |
54425164 |
gaccaatttgatattttatact---atatgaaactctacaaaaaaaaccgtgcatcgcacgtgttgga-----gtctaaaaat----tatctattacaat |
54425251 |
T |
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| Q |
209 |
ggacgcagttccgtctaaatccaaacaatagaaggaacaaaaatggaagaagaaagcgaagccgagtggggcgagttgactcgtgagtgcctcatcaata |
308 |
Q |
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| T |
54425252 |
ggacgcagttccgtctaaatccaaacaatagaaggaacaaaaatggaagtagaaagcgaagccgagtggggcgagttgactcgtgagtgcctcatcaaca |
54425351 |
T |
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| Q |
309 |
tcctatctcgactcagctttgacgatcaatggcgtggtgcgatgcttgtttgcaaatcatggttcaacgccttcaaggaagaaccatctcttcactctgt |
408 |
Q |
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| T |
54425352 |
tcctatctcgactcagctttgaagatcaatggcgcggttcgttgcttgtttgcaaatcatggttcaacgccttcaaggaagaaccatctcttcactctgt |
54425451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 54424883 - 54424980
Alignment:
| Q |
19 |
gaagaggcatatcaaataagttgcagttttttacagcatc-------cctctaatgacccaggaaggacggtctggaccacctctacgattaataata |
109 |
Q |
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| T |
54424883 |
gaagaggcatatcaaataagttgcagtcttttacaacatcttggaatcctctaatgagccacgaaggacggtctggaccacctctacgattaataata |
54424980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 275 - 406
Target Start/End: Complemental strand, 54430430 - 54430299
Alignment:
| Q |
275 |
tggggcgagttgactcgtgagtgcctcatcaatatcctatctcgactcagctttgacgatcaatggcgtggtgcgatgcttgtttgcaaatcatggttca |
374 |
Q |
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| T |
54430430 |
tggggcgagttatctcgagattgcctcatcaacatcttcattcgactcaccgttgaagatcaatggcgcggtgcaatgcttgtatgtaaatcatggttca |
54430331 |
T |
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| Q |
375 |
acgccttcaaggaagaaccatctcttcactct |
406 |
Q |
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| T |
54430330 |
gtgcctttaaggaagaaccttctcttcactct |
54430299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 37381841 - 37381911
Alignment:
| Q |
93 |
ctctacgattaataatatgaccaatttgatattttatagttatatatgaaactctacaaaaacccgtgcatcgcacg |
169 |
Q |
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| T |
37381841 |
ctctacgattaataatatagtcaatttgatattttat------atatgaaactctacaaaaacacgtgcatcgcacg |
37381911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 20119957 - 20119878
Alignment:
| Q |
21 |
agaggcatatcaaataagttgcagttttttacagcatc-------cctctaatgacccaggaaggacggtctggaccacc |
93 |
Q |
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| T |
20119957 |
agaggcatatcaaataagttgcagtctttaacagcatcttggaagcctctaatgagccaagaaggacggtctggaccacc |
20119878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0317 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0317
Description:
Target: scaffold0317; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 19833 - 19789
Alignment:
| Q |
128 |
atagttatatatgaaactctacaaaaacccgtgcatcgcacgtgtt |
173 |
Q |
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| T |
19833 |
atagttatatatgaaactctac-aaaacctgtgcatcgcacgtgtt |
19789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 30694392 - 30694356
Alignment:
| Q |
132 |
ttatatatgaaactctacaaaaacccgtgcatcgcacg |
169 |
Q |
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| T |
30694392 |
ttatatatgaaactctac-aaaacccgtgcatcgcacg |
30694356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 15107465 - 15107429
Alignment:
| Q |
93 |
ctctacgattaataatatgaccaatttgatattttat |
129 |
Q |
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| T |
15107465 |
ctctacgattaataatatagccaatttgatattttat |
15107429 |
T |
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