View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13078_low_4 (Length: 327)
Name: NF13078_low_4
Description: NF13078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13078_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 13 - 311
Target Start/End: Original strand, 11845398 - 11845696
Alignment:
| Q |
13 |
aatatcaattgaagctactcaccttaccacagtagttcaaggtacttttggttacttagaccctgagtactttcatacaagtcaatttaccgagaaaagt |
112 |
Q |
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| T |
11845398 |
aatatcaattgaagctactcaccttaccacggtagttcaaggtacttttggttacttagaccctgagtactttcatacaagtcaatttaccgagaaaagt |
11845497 |
T |
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| Q |
113 |
gatgtatttagcttcggagtagttcttgctgaacttttaaccggtaagaagccggtatcctctataggatctggcgaataccaaagtttagcttcctatt |
212 |
Q |
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| T |
11845498 |
gatgtatttagcttcggagtagttcttgctgaacttttaaccggtaagaagccggtatcctctataggatctggcgaataccaaagtttagcttcctatt |
11845597 |
T |
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| Q |
213 |
ttattgagtgtatagatgagaatatgttgtttgacattattgacaaaagggtcacaaaagaaggggagaaagaacatgtcgttgcagttgcaaatcttg |
311 |
Q |
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| T |
11845598 |
ttattgagtgtatagatgagaatatgttgtttgacattattgacaaaagggtcacaaaagaaggggagaaagaacatgtcgttgcagttgcaaatcttg |
11845696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 311
Target Start/End: Original strand, 11850131 - 11850425
Alignment:
| Q |
17 |
tcaattgaagctactcaccttaccacagtagttcaaggtacttttggttacttagaccctgagtactttcatacaagtcaatttaccgagaaaagtgatg |
116 |
Q |
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| T |
11850131 |
tcaattgaagctactcaccttaccacagtagttcaaggtacttttggttacttagaccctgagtactttcatacaagtcaatttactgagaaaagtgatg |
11850230 |
T |
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| Q |
117 |
tatttagcttcggagtagttcttgctgaacttttaaccggtaagaagccggtatcctctataggatctggcgaataccaaagtttagcttcctattttat |
216 |
Q |
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| T |
11850231 |
tgtacagcttcggagttgttcttgctgaacttttaacgggtaagaagccaatatctgcaataggatctggggaataccaaaatttagcttcctattttat |
11850330 |
T |
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| Q |
217 |
tgagtgtatagatgagaatatgttgtttgacattattgacaaaagggtcacaaaagaaggggagaaagaacatgtcgttgcagttgcaaatcttg |
311 |
Q |
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| T |
11850331 |
tcagtgtatagaggaggatatgttgtttgatattattgacaaaagggttacgaaagaaggggagaaagaacatgtcgttgcagttgcaaatcttg |
11850425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 9118765 - 9118846
Alignment:
| Q |
60 |
ttggttacttagaccctgagtactttcatacaagtcaatttaccgagaaaagtgatgtatttagcttcggagtagttcttgc |
141 |
Q |
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| T |
9118765 |
ttggatacttagacccagagtacatgcaaacgcatcaattaaccgagaaaagtgatgtttatagctttggagtagttcttgc |
9118846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 1815836 - 1815785
Alignment:
| Q |
89 |
acaagtcaatttaccgagaaaagtgatgtatttagcttcggagtagttcttg |
140 |
Q |
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| T |
1815836 |
acaagccaattaactgagaaaagtgatgtatatagctttggagtagttcttg |
1815785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 1843158 - 1843248
Alignment:
| Q |
50 |
caaggtacttttggttacttagaccctgagtactttcatacaagtcaatttaccgagaaaagtgatgtatttagcttcggagtagttcttg |
140 |
Q |
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| T |
1843158 |
caaggaactattggctacttagatccagagtatatgcaaacaagtcaattaactgaaaaaagtgatgtctatagctttggagtagttcttg |
1843248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 1857169 - 1857259
Alignment:
| Q |
50 |
caaggtacttttggttacttagaccctgagtactttcatacaagtcaatttaccgagaaaagtgatgtatttagcttcggagtagttcttg |
140 |
Q |
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| T |
1857169 |
caaggaactattggctacttagatccagagtatatgcaaacaagtcaattaactgaaaaaagtgatgtctatagctttggagtagttcttg |
1857259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 1868767 - 1868857
Alignment:
| Q |
50 |
caaggtacttttggttacttagaccctgagtactttcatacaagtcaatttaccgagaaaagtgatgtatttagcttcggagtagttcttg |
140 |
Q |
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| T |
1868767 |
caaggaactattggctacttagatccagagtatatgcaaacaagtcaattaactgaaaaaagtgatgtctatagctttggagtagttcttg |
1868857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 158
Target Start/End: Original strand, 30116312 - 30116418
Alignment:
| Q |
52 |
aggtacttttggttacttagaccctgagtactttcatacaagtcaatttaccgagaaaagtgatgtatttagcttcggagtagttcttgctgaactttta |
151 |
Q |
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|||||||||||| ||| | || ||||| || ||||| ||||||||||||| || || |||||||||| ||| ||||| || || |||| ||| ||| || |
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| T |
30116312 |
aggtacttttgggtacatggatcctgaatattttcagtcaagtcaatttacagataagagtgatgtatatagtttcggcgtggtgcttgttgagcttata |
30116411 |
T |
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| Q |
152 |
accggta |
158 |
Q |
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| T |
30116412 |
accggta |
30116418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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