View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13078_low_5 (Length: 241)

Name: NF13078_low_5
Description: NF13078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13078_low_5
NF13078_low_5
[»] chr1 (12 HSPs)
chr1 (16-241)||(2947134-2947359)
chr1 (16-213)||(3353329-3353526)
chr1 (16-183)||(3363955-3364125)
chr1 (22-152)||(3342627-3342760)
chr1 (16-165)||(3217179-3217331)
chr1 (93-165)||(2007912-2007984)
chr1 (100-188)||(3380268-3380356)
chr1 (94-181)||(4333563-4333650)
chr1 (111-152)||(1794136-1794177)
chr1 (93-165)||(2021049-2021121)
chr1 (94-174)||(3374136-3374216)
chr1 (94-174)||(3366430-3366510)
[»] chr2 (4 HSPs)
chr2 (16-181)||(20924468-20924636)
chr2 (101-181)||(39275308-39275388)
chr2 (102-181)||(20936167-20936246)
chr2 (115-165)||(20954421-20954471)
[»] chr4 (1 HSPs)
chr4 (16-180)||(21238858-21239025)
[»] chr5 (1 HSPs)
chr5 (100-152)||(17971152-17971204)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 2947359 - 2947134
Alignment:
Q  16 ttaacacccgcctcctattgttggaaagatatattttcggatccatccatgcccctcggagtgcaacacgtgagcataggcatttctggtatcaaatctg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2947359 ttaacacccgcctcctattgttggaaagatatattttcggatccatccatgcccctcggagtgcaacacgtgagcataggcatttctggtatcaaatctg 2947260  T
Q  116 aattagattttatcagatttcttcttctacattctccaatgctagaaaaggtgattgtggagcctgatgtagagatcagacctgaggtgatgacagaact 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2947259 aattagattttatcagatttcttcttctacattctccaatgctagaaaaggtgattgtggagcctgatgtagagatcagatctgaggtgatgacagaact 2947160  T
Q  216 attacagctcaagaaagtgtcgagac 241  Q
    |||||||||||||||| |||||||||    
T  2947159 attacagctcaagaaaatgtcgagac 2947134  T

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Target: chr1; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 3353329 - 3353526
Alignment:
Q  16 ttaacacccgcctcctattgttggaaagatatattttcggatccatccatgcccctcggagtgcaacacgtgagcataggcatttctggtatcaaatctg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3353329 ttaacacccgcctcctattgttggaaagatatattttcggatccatccatgcccctcggagtgcaacacgtgagcataggcatttctggtatcaaatctg 3353428  T
Q  116 aattagattttatcagatttcttcttctacattctccaatgctagaaaaggtgattgtggagcctgatgtagagatcagacctgaggtgatgacagaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||| ||||| ||||||||||||||||||||||||||    
T  3353429 aattagattttatcagatttcttcttctacattctccaatgctagaatatgtgattttggagccttatgtaaagatcagacctgaggtgatgacagaa 3353526  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 3363955 - 3364125
Alignment:
Q  16 ttaacacccgcctcctattgttggaaagatatattttcggatccatccatgcccctcggagtgcaacacgtgagcata---ggcatttctggtatcaaat 112  Q
    |||||| || |||||||||||||| || ||||||||||||| ||| | |||||| | | ||||| ||| ||||| ||    ||||| |||||  | ||||    
T  3363955 ttaacatccacctcctattgttgggaaaatatattttcggagccaacaatgcccattgaagtgcgacatgtgaggatgcatggcatctctggctttaaat 3364054  T
Q  113 ctgaattagattttatcagatttcttcttctacattctccaatgctagaaaaggtgattgtggagcctgat 183  Q
    ||||||||||||||||||||||||| ||| || |||||||  | ||||||||| |||||||||||||||||    
T  3364055 ctgaattagattttatcagatttctgcttttatattctcctgtactagaaaagatgattgtggagcctgat 3364125  T

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Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 152
Target Start/End: Original strand, 3342627 - 3342760
Alignment:
Q  22 cccgcctcctattgttggaaagatatattttcggatccatccatgcccctcggagtgcaacacgtgagcata---ggcatttctggtatcaaatctgaat 118  Q
    |||| ||||| ||| ||| |||||||||||||||| ||||||||||| |||||||| |||||| |||  |||   ||||| ||||||| |||||||||||    
T  3342627 cccgtctcctgttgctgggaagatatattttcggagccatccatgcctctcggagttcaacacatgatgatagatggcatctctggtaccaaatctgaat 3342726  T
Q  119 tagattttatcagatttcttcttctacattctcc 152  Q
    |||||||||||  |||||| |||||| |||||||    
T  3342727 tagattttatccaatttctacttctatattctcc 3342760  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 3217331 - 3217179
Alignment:
Q  16 ttaacacccgcctcctattgttggaaagatatattttcggatccatccatgcccctcggagtgcaacacgtgagcat---aggcatttctggtatcaaat 112  Q
    |||||||||||||||||||||||||||||| | |||| ||| ||| || |||||||| ||||||  || ||||||||   ||| || ||||  |  | ||    
T  3217331 ttaacacccgcctcctattgttggaaagatgtctttttggagccacccgtgcccctccgagtgcgccatgtgagcataaaaggaatctctgacaatacat 3217232  T
Q  113 ctgaattagattttatcagatttcttcttctacattctccaatgctagaaaag 165  Q
    ||||||||||||||||||||||||| ||| |  ||||||| ||||||||||||    
T  3217231 ctgaattagattttatcagatttctacttatgtattctcccatgctagaaaag 3217179  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 2007912 - 2007984
Alignment:
Q  93 aggcatttctggtatcaaatctgaattagattttatcagatttcttcttctacattctccaatgctagaaaag 165  Q
    |||||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||| ||  |||||||||||    
T  2007912 aggcatctctggcatcaaatctgaattagattttatgagatttctacttctccattcgcctgtgctagaaaag 2007984  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 3380268 - 3380356
Alignment:
Q  100 tctggtatcaaatctgaattagattttatcagatttcttcttctacattctccaatgctagaaaaggtgattgtggagcctgatgtaga 188  Q
    |||||||||||||| ||||||||||||||  | ||||| |||||  ||||||| |||||||||||| |||||||| ||| || ||||||    
T  3380268 tctggtatcaaatcggaattagattttattcggtttctacttctctattctcctatgctagaaaagatgattgtgaagcatgttgtaga 3380356  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 181
Target Start/End: Complemental strand, 4333650 - 4333563
Alignment:
Q  94 ggcatttctggtatcaaatctgaattagattttatcagatttcttcttctacattctccaatgctagaaaaggtgattgtggagcctg 181  Q
    ||||| ||||||| | | ||||||||| |||| ||||||||||| |||||| ||||||   ||||||||||| |||||||| ||||||    
T  4333650 ggcatctctggtacccagtctgaattaaatttgatcagatttctacttctatattctctggtgctagaaaagatgattgtgaagcctg 4333563  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 1794136 - 1794177
Alignment:
Q  111 atctgaattagattttatcagatttcttcttctacattctcc 152  Q
    ||||||||||||||||||||||||||| |||||| |||||||    
T  1794136 atctgaattagattttatcagatttctacttctatattctcc 1794177  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 2021049 - 2021121
Alignment:
Q  93 aggcatttctggtatcaaatctgaattagattttatcagatttcttcttctacattctccaatgctagaaaag 165  Q
    |||||| |||||||| ||| |||||||||||||| | |||||||| |||||  |||| || ||||||||||||    
T  2021049 aggcatctctggtatgaaagctgaattagattttttgagatttctacttctctattcgcctatgctagaaaag 2021121  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 3374136 - 3374216
Alignment:
Q  94 ggcatttctggtatcaaatctgaattagattttatcagatttcttcttctacattctccaatgctagaaaaggtgattgtg 174  Q
    ||||| |||||||||| ||| ||||||||||||||  | ||||| |||| | |||||||  ||||||||||| ||||||||    
T  3374136 ggcatctctggtatcagatcagaattagattttattcggtttctacttcgatattctcctgtgctagaaaagatgattgtg 3374216  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 3366430 - 3366510
Alignment:
Q  94 ggcatttctggtatcaaatctgaattagattttatcagatttcttcttctacattctccaatgctagaaaaggtgattgtg 174  Q
    ||||| |||||||||||||| ||| ||||||||||  | ||||| ||||   ||||||| |||||||| ||| ||||||||    
T  3366430 ggcatctctggtatcaaatcggaactagattttattcggtttctacttcgctattctcctatgctagacaagatgattgtg 3366510  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 20924468 - 20924636
Alignment:
Q  16 ttaacacccgcctcctattgttggaaagatatattttcggatccatccatgcccctcggagtgcaacacgtgagcata---ggcatttctggtatcaaat 112  Q
    ||||||| | |||||||||||||| ||||||| |||||||| |||   |||| ||||  | ||||||| |||   |||   | ||| ||||||| |||||    
T  20924468 ttaacacacacctcctattgttgggaagatatcttttcggagccagatatgctcctcaaattgcaacatgtggagatacaagacatctctggtaccaaat 20924567  T
Q  113 ctgaattagattttatcagatttcttcttctacattctccaatgctagaaaaggtgattgtggagcctg 181  Q
    ||||||||||||||||||||||||| |||||  |||| ||  ||||  ||||| |||||||||||||||    
T  20924568 ctgaattagattttatcagatttctacttctctattcacctgtgctcaaaaagatgattgtggagcctg 20924636  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 39275308 - 39275388
Alignment:
Q  101 ctggtatcaaatctgaattagattttatcagatttcttcttctacattctccaatgctagaaaaggtgattgtggagcctg 181  Q
    |||| ||||||||||||||||||||||||| |||||||||  |  ||||||| |||||||||||  |||||||| ||||||    
T  39275308 ctggcatcaaatctgaattagattttatcaaatttcttctcatgtattctcctatgctagaaaaaatgattgtgaagcctg 39275388  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 20936167 - 20936246
Alignment:
Q  102 tggtatcaaatctgaattagattttatcagatttcttcttctacattctccaatgctagaaaaggtgattgtggagcctg 181  Q
    ||||| |||||  |||||||||||||||| |||||| |||||| |||||||  ||||||||||| ||| |||| ||||||    
T  20936167 tggtaacaaattggaattagattttatcaaatttctacttctatattctcctgtgctagaaaagatgactgtgaagcctg 20936246  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 20954421 - 20954471
Alignment:
Q  115 gaattagattttatcagatttcttcttctacattctccaatgctagaaaag 165  Q
    |||||||||||||||| |||||| |||||| ||||||| ||||||||||||    
T  20954421 gaattagattttatcaaatttctacttctatattctcccatgctagaaaag 20954471  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 21238858 - 21239025
Alignment:
Q  16 ttaacacccgcctcctattgttggaaagatatattttcggatccatccatgcccctcggagtgcaacacgtgagcataggcatt---tctggtatcaaat 112  Q
    |||||||| ||||||||||||||| ||||||| |||||    |||  ||||||||||  ||||||||| || |  |||| |||    |||||| |  |||    
T  21238858 ttaacaccggcctcctattgttgggaagatatcttttcccggccagacatgcccctcaaagtgcaacatgtaacaatagacataatctctggttttcaat 21238957  T
Q  113 ctgaattagattttatcagatttcttcttctacattctccaatgctagaaaaggtgattgtggagcct 180  Q
    |||| |||||||||||||||||||| |||||  ||||||| ||| |||||||| ||| |||| |||||    
T  21238958 ctgagttagattttatcagatttctacttctcaattctcctatgttagaaaagatgactgtgaagcct 21239025  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 17971152 - 17971204
Alignment:
Q  100 tctggtatcaaatctgaattagattttatcagatttcttcttctacattctcc 152  Q
    ||||||| |||||||||||||||||| || |||||||| |||| | |||||||    
T  17971152 tctggtaccaaatctgaattagatttcattagatttctacttcaatattctcc 17971204  T

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