View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13079_high_1 (Length: 451)
Name: NF13079_high_1
Description: NF13079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13079_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 18 - 437
Target Start/End: Original strand, 54183751 - 54184169
Alignment:
| Q |
18 |
aatgcatgaagttgattttagtccactgaattcagccacctcaagtctctgcacaagcaaagtaaagtgaagtataagacacttttaattaaaatatgaa |
117 |
Q |
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| T |
54183751 |
aatgcatgaagttgattttagtccactgaattcagccacctcaagtctctgcacaagcaaagtaaagtgaagtataagacacttttaattaaaatatgaa |
54183850 |
T |
|
| Q |
118 |
acaaaagcaatcatgaaggacacaactttagagagagtgaaacctttgaggcacattgagttgggaaagagtgggaggcctttgatggaaaccttgtgct |
217 |
Q |
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| T |
54183851 |
acaaa-gcaatcatgaaggacacaactttagagagagtgaaacctttgaggcacattgagttgggaaagagtgggaggcctttgatggaaaccttgtgct |
54183949 |
T |
|
| Q |
218 |
tgtagggattcttgtagaagctaaagctgcatgagtggccatagctatagatgcaaccaagctgaaaaacaactctttgctgagtgtttattatattcac |
317 |
Q |
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| T |
54183950 |
tgtagggattcttgtagaagctaaagctgcatgagtggccatagctatagatgcaaccaagctgaaaaacaactctttgctgagtgtttattatattcac |
54184049 |
T |
|
| Q |
318 |
aatgaaaattatggttgatgaatgagtggttaatatcttgagaaaaagaaaattatggttgctgggggagtaatggaatgagtggtgaataatttgtaag |
417 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54184050 |
aatgaaaattctggttgatgaatgagtggttaatatcttgagaaaaagaaaattatggttgctgggggagtaatggaatgagtggtgaataatttgtaag |
54184149 |
T |
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| Q |
418 |
aatatctacaagataagata |
437 |
Q |
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| T |
54184150 |
aatatctacaagataagata |
54184169 |
T |
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