View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13079_high_3 (Length: 422)

Name: NF13079_high_3
Description: NF13079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13079_high_3
NF13079_high_3
[»] chr8 (5 HSPs)
chr8 (1-408)||(30141859-30142267)
chr8 (324-376)||(15195982-15196034)
chr8 (11-76)||(19452614-19452679)
chr8 (11-76)||(19528397-19528462)
chr8 (11-76)||(13217951-13218016)
[»] chr7 (2 HSPs)
chr7 (11-76)||(2476747-2476812)
chr7 (11-76)||(26572776-26572841)
[»] chr4 (3 HSPs)
chr4 (11-76)||(10179321-10179385)
chr4 (20-76)||(30500460-30500516)
chr4 (11-76)||(50688515-50688580)
[»] chr1 (2 HSPs)
chr1 (11-76)||(1972148-1972213)
chr1 (22-76)||(26099920-26099974)
[»] chr6 (1 HSPs)
chr6 (113-151)||(20712075-20712112)
[»] chr5 (2 HSPs)
chr5 (113-151)||(26627338-26627376)
chr5 (115-151)||(25028386-25028422)
[»] chr3 (1 HSPs)
chr3 (119-152)||(49886806-49886839)
[»] chr2 (1 HSPs)
chr2 (11-76)||(17558409-17558474)


Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 30142267 - 30141859
Alignment:
Q  1 agaaaatggatgagcttgaagcatcagcaaagtagtcctaactctaattcacgaggaactagcactcatgctcatcatatattttatgtaatgttaaaat 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30142267 agaaaatggatgagcttgaagcatcagcaaagtagttctaactctaattcacgaggaactagcacccatgctcatcatatattttatgtaatgttaaaat 30142168  T
Q  101 aaagaagaagagagttgtctaaaagttgcttaaaaatagtt-gtacaaatatatcaattctttttatattcttgatggagaacttgtagtgtcaactaga 199  Q
    ||||||||||||| |||||||||||||| |||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  30142167 aaagaagaagagaattgtctaaaagttgtttaaaaatagttagtataaatatatcaattctttttatatttttgatggagaacttgcagtgtcaactaga 30142068  T
Q  200 gatcttaatttactnnnnnnncaagaaatctttattgttagaactaatgttataaaataaaatagaagctggtaagattaatttatttttaaaaaatgtg 299  Q
    ||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30142067 gatcttaatttactaaaaaaacaagaaatctttattgttagaactaatgttataaaataaaatagaagctggtaagattaatttatttttaaaaaatgtg 30141968  T
Q  300 ggcattggggttgaattctgattggatcaaggttggtttcaccactaccatatgattattttggaaatgctatgatacatgaaagtcaaggagctattag 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30141967 ggcattggggttgaattctgattggatcaaggttggtttcaccaccaccatatgattattttggaaatgctatgatacatgaaagtcaaggagctattag 30141868  T
Q  400 aagaaggtg 408  Q
    |||||||||    
T  30141867 aagaaggtg 30141859  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 376
Target Start/End: Original strand, 15195982 - 15196034
Alignment:
Q  324 gatcaaggttggtttcaccactaccatatgattattttggaaatgctatgata 376  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  15195982 gatcaaggttggttccaccactatcatatgattattttggaaatgctatgata 15196034  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 19452614 - 19452679
Alignment:
Q  11 tgagcttgaagcatcagcaaagtagtcctaactctaattcacgaggaactagcactcatgctcatc 76  Q
    ||||||||||||||||   ||||| |||||||||||| |||| | ||||| |||||||||||||||    
T  19452614 tgagcttgaagcatcactcaagtaatcctaactctaaatcactaagaactcgcactcatgctcatc 19452679  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 19528462 - 19528397
Alignment:
Q  11 tgagcttgaagcatcagcaaagtagtcctaactctaattcacgaggaactagcactcatgctcatc 76  Q
    ||||||||||||||||   ||||| |||||||||||| |||| | ||||| |||||||||||||||    
T  19528462 tgagcttgaagcatcactcaagtaatcctaactctaaatcactaagaactcgcactcatgctcatc 19528397  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 13217951 - 13218016
Alignment:
Q  11 tgagcttgaagcatcagcaaagtagtcctaactctaattcacgaggaactagcactcatgctcatc 76  Q
    |||| |||||||||||   ||||| |||||||||||| |||| |||| ||||||| ||||||||||    
T  13217951 tgagattgaagcatcacttaagtaatcctaactctaaatcactaggagctagcacacatgctcatc 13218016  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 2476747 - 2476812
Alignment:
Q  11 tgagcttgaagcatcagcaaagtagtcctaactctaattcacgaggaactagcactcatgctcatc 76  Q
    |||||||||||||||| | ||||| |||| ||||||| |||| | |||||||||||||||||||||    
T  2476747 tgagcttgaagcatcacccaagtaatcctgactctaaatcactaagaactagcactcatgctcatc 2476812  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 26572776 - 26572841
Alignment:
Q  11 tgagcttgaagcatcagcaaagtagtcctaactctaattcacgaggaactagcactcatgctcatc 76  Q
    |||||||||||||||| | || || || ||||||||| |||| | |||||| ||||||||||||||    
T  26572776 tgagcttgaagcatcacccaaataatcttaactctaaatcactaagaactaacactcatgctcatc 26572841  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 10179385 - 10179321
Alignment:
Q  11 tgagcttgaagcatcagcaaagtagtcctaactctaattcacgaggaactagcactcatgctcatc 76  Q
    |||||| ||||||||| ||| ||| ||||||||||||||||| | |||||||||||||||||||||    
T  10179385 tgagctagaagcatcatcaa-gtaatcctaactctaattcactaagaactagcactcatgctcatc 10179321  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 30500516 - 30500460
Alignment:
Q  20 agcatcagcaaagtagtcctaactctaattcacgaggaactagcactcatgctcatc 76  Q
    ||||||| ||||||| |||||| |||||||||| | |||||||||||||||||||||    
T  30500516 agcatcaccaaagtaatcctaaatctaattcactaagaactagcactcatgctcatc 30500460  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 50688580 - 50688515
Alignment:
Q  11 tgagcttgaagcatcagcaaagtagtcctaactctaattcacgaggaactagcactcatgctcatc 76  Q
    ||||||||||| |||| ||||||| || ||||||||| |||| | |||| ||||||||||||||||    
T  50688580 tgagcttgaagtatcaccaaagtaatcataactctaaatcactaagaacgagcactcatgctcatc 50688515  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 1972213 - 1972148
Alignment:
Q  11 tgagcttgaagcatcagcaaagtagtcctaactctaattcacgaggaactagcactcatgctcatc 76  Q
    |||||||||||||||| ||||||| ||||||||||| ||  | | |||||||||||||||||||||    
T  1972213 tgagcttgaagcatcaccaaagtaatcctaactctagttatctaagaactagcactcatgctcatc 1972148  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 26099974 - 26099920
Alignment:
Q  22 catcagcaaagtagtcctaactctaattcacgaggaactagcactcatgctcatc 76  Q
    ||||| ||||||| |  |||||||||||||| | |||||||||||||||||||||    
T  26099974 catcaccaaagtaattataactctaattcactaagaactagcactcatgctcatc 26099920  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 20712112 - 20712075
Alignment:
Q  113 agttgtctaaaagttgcttaaaaatagttgtacaaatat 151  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  20712112 agttgtctaaaagttg-ttaaaaatagttgtacaaatat 20712075  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 26627376 - 26627338
Alignment:
Q  113 agttgtctaaaagttgcttaaaaatagttgtacaaatat 151  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  26627376 agttgtctaaaagttgataaaaaatagttgtacaaatat 26627338  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 25028386 - 25028422
Alignment:
Q  115 ttgtctaaaagttgcttaaaaatagttgtacaaatat 151  Q
    |||||||||||||| || |||||||||||||||||||    
T  25028386 ttgtctaaaagttgttttaaaatagttgtacaaatat 25028422  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 152
Target Start/End: Original strand, 49886806 - 49886839
Alignment:
Q  119 ctaaaagttgcttaaaaatagttgtacaaatata 152  Q
    |||||||||| |||||||||||||||||||||||    
T  49886806 ctaaaagttgtttaaaaatagttgtacaaatata 49886839  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 17558409 - 17558474
Alignment:
Q  11 tgagcttgaagcatcagcaaagtagtcctaactctaattcacgaggaactagcactcatgctcatc 76  Q
    |||| ||||||||||| | ||||| ||||||||  || |||| | |||||||||||||||||||||    
T  17558409 tgagtttgaagcatcacctaagtaatcctaacttaaaatcactaagaactagcactcatgctcatc 17558474  T

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