View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13079_high_5 (Length: 366)
Name: NF13079_high_5
Description: NF13079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13079_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 8 - 347
Target Start/End: Complemental strand, 5326452 - 5326113
Alignment:
| Q |
8 |
agattattctctagatttcttaacggtgattcaagtgttttgtgaaaacatgttggagatgattgtaggttggagataaaaatgcaaaatatgtttatga |
107 |
Q |
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| T |
5326452 |
agattattctctagatttcttaacggtgattcaagtgttttgtgaaaacatgttggagatgattgtaggttggagataaaagtgcaaaatatgtttatga |
5326353 |
T |
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| Q |
108 |
aaaacgataaaccgaaaagggatccatatgtttaaatgaaactttttaattccaactatctacttttgatttaatggttgataattgttcttctaaattc |
207 |
Q |
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| T |
5326352 |
aaaacgataaaccgaaaagggatccatatgtttaaatgaaactttttaattccaactatctacttttgatttaatggttgataattgttcttctaaattc |
5326253 |
T |
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| Q |
208 |
aaacaaatacatagacttttatctcctcgttgagaagcatatgtttggttttttgttttggttaagtactatttcttgaataatgagagaaacataaact |
307 |
Q |
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| T |
5326252 |
aaacaaatacatagacttttatctcctcgttgagaagcatatgtttggttttttgttttggttaagtactatttcttgaataatgagagaaacataaact |
5326153 |
T |
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| Q |
308 |
agaatcacaccatgatttgttaactatatacaaagcttct |
347 |
Q |
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| T |
5326152 |
agaatcacaccatgatttgttaactatatacaaagcttct |
5326113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 43466253 - 43466168
Alignment:
| Q |
30 |
acggtgattcaagtgttttgtgaaaacatgttggagatgattgtaggtt---ggagataaaaatgcaaaatatgtttatgaaaaac |
112 |
Q |
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| T |
43466253 |
acggtgattcaagtgttttgtgaaaacatgttgcagatgactgtggattgaagaagataaaaatgcaaaatgggtttatgaaaaac |
43466168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 43466129 - 43466093
Alignment:
| Q |
165 |
atctacttttgatttaatggttgataattgttcttct |
201 |
Q |
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| T |
43466129 |
atctacttttgatttaatggttgataagtgttcttct |
43466093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 334
Target Start/End: Complemental strand, 26460674 - 26460595
Alignment:
| Q |
255 |
gttttttgttttggttaagtactatttcttgaataatgagagaaacataaactagaatcacaccatgatttgttaactat |
334 |
Q |
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| T |
26460674 |
gtttttcgttttggtaaagtactatttcatgaataatgatatcaacataaactattatcagaccaggatttgataactat |
26460595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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