View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13079_high_6 (Length: 357)
Name: NF13079_high_6
Description: NF13079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13079_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 41211818 - 41211471
Alignment:
| Q |
1 |
atgtacacaggcatcatccaaattatttacaatctagaaatcaaagaggagcaactatatcatactatactatgttttcttataatctttcatgattcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41211818 |
atgtacacaggcatcatccaaattatttacagtctagaaatcaaagaggagcaactatatcatactatactatgttttcttataatctttcatgattcaa |
41211719 |
T |
|
| Q |
101 |
ttccacttaaatttttaagctataccaaatgctagcaatgatggacaaaaaattcatgtgtgcaaccttccagtcaagtagtgagacaaactttctctta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41211718 |
ttccacttaaatttttaagctataccaaatgctagcaatgatggacaaaaaatt-atgtgtgcaaccttccagtcaagtagtgagacaaactttctctta |
41211620 |
T |
|
| Q |
201 |
gtgccactcccttctcatcaacacctccataaacaagttgatggtaacctgagtcatgattattacgatagaaacatagtaactcatcattcacttcatc |
300 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41211619 |
gtgccactcccttctcatcaaaaccttcataaacaagttgatggtaacctgagtcatgattattacgatagaaacatagtaactcatcattcacttcatc |
41211520 |
T |
|
| Q |
301 |
ttgcatgtcaataacaatgttgtgaagtatgcaacaaacaagaataatc |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41211519 |
ttgcatgtcaataacaatgttgtgaagtatgcaacaaacaagaataatc |
41211471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 163 - 349
Target Start/End: Complemental strand, 41201608 - 41201422
Alignment:
| Q |
163 |
caaccttccagtcaagtagtgagacaaactttctcttagtgccactcccttctcatcaacacctccataaacaagttgatggtaacctgagtcatgatta |
262 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||| |||||||||||| || |||||||||||| |
|
|
| T |
41201608 |
caaccttccattcaagtagtgagacaaactttctcttagtgccactcccatctcatcaacaccttcacaaataagttgatggtacccagagtcatgatta |
41201509 |
T |
|
| Q |
263 |
ttacgatagaaacatagtaactcatcattcacttcatcttgcatgtcaataacaatgttgtgaagtatgcaacaaacaagaataatc |
349 |
Q |
| |
|
||| |||| ||| | || || ||||| ||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41201508 |
ttatgatacaaatagagcaattcatccttcacttcatcttgcatatcaatgacaatgttgtgaagtaagcaacaaacaagaataatc |
41201422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University