View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13079_low_1 (Length: 474)
Name: NF13079_low_1
Description: NF13079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13079_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 8 - 457
Target Start/End: Complemental strand, 2390265 - 2389809
Alignment:
| Q |
8 |
ccaataatattaccaattacccttaattttgtttagagaatgtaacaaatttttatgacattttctctctctttccaattaggccgtctacactcctcca |
107 |
Q |
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| T |
2390265 |
ccaacaatattaccaattacccttaattttgtttagagaatgtaacaaatttttatgacattttctctctctttccaattaggccgtctacactcctcca |
2390166 |
T |
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| Q |
108 |
aaaccagtacgaggaggaattccaatctgttttccacaggtaattttagat-------agcagtactatttatttaacacctgaattacacaaatctata |
200 |
Q |
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| T |
2390165 |
aaaccagtacgaggaggaattccaatctgttttccacaggtaattttagattttagatagcagtactatttatttaacacctgaattacacaaatctata |
2390066 |
T |
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| Q |
201 |
tagatagatagatagataaaaaggttggttggtgtgattttttagtttggaaaccgtggaacactagagcaacatggatttgcaaggaataagatatggg |
300 |
Q |
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| T |
2390065 |
tagatagatagatagataaaaaggttggttggtgtgattttttagtttggaaaccgtggaacactagagcaacatggatttgcaaggaataagatatggg |
2389966 |
T |
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| Q |
301 |
ttattgatcaaaatcctccaccgctgcccacagattcaaatggaaaagcttgcatcgacttgctgctcaaaccatctgaagatgatatgaagatatggcc |
400 |
Q |
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| T |
2389965 |
ttattgatcaaaatcctccaccgctgcccacagattcaaatggaaaagcttgcatcgacttgctgctcaaaccatctgaagacgatatgaagatatggcc |
2389866 |
T |
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| Q |
401 |
acataggtgcgacgcgctttatcttctatactttactaacatcacagccagcatttt |
457 |
Q |
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| T |
2389865 |
acataggtgcgacgcgctttatcttctatactttactaacatcacagccagcatttt |
2389809 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 36807781 - 36807825
Alignment:
| Q |
105 |
ccaaaaccagtacgaggaggaattccaatctgttttccacaggta |
149 |
Q |
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| T |
36807781 |
ccaaaagcaatacgaggaggaattccaatatgttttccacaggta |
36807825 |
T |
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