View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13079_low_3 (Length: 447)

Name: NF13079_low_3
Description: NF13079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13079_low_3
NF13079_low_3
[»] chr7 (1 HSPs)
chr7 (26-435)||(17158499-17158915)
[»] chr1 (2 HSPs)
chr1 (26-435)||(11780083-11780496)
chr1 (176-290)||(10424692-10424805)
[»] chr2 (3 HSPs)
chr2 (82-412)||(12101751-12102082)
chr2 (112-228)||(22171074-22171190)
chr2 (112-228)||(22172402-22172518)
[»] chr6 (3 HSPs)
chr6 (62-416)||(14977470-14977830)
chr6 (94-275)||(11776307-11776487)
chr6 (178-290)||(9352405-9352516)
[»] chr5 (2 HSPs)
chr5 (94-423)||(5781861-5782196)
chr5 (99-275)||(19069534-19069709)
[»] chr3 (5 HSPs)
chr3 (176-290)||(16311592-16311705)
chr3 (176-290)||(16313983-16314096)
chr3 (176-290)||(18488376-18488489)
chr3 (176-290)||(18492586-18492699)
chr3 (176-290)||(18494977-18495090)
[»] chr4 (1 HSPs)
chr4 (97-290)||(33041474-33041666)
[»] chr8 (1 HSPs)
chr8 (99-231)||(29820419-29820551)


Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 26 - 435
Target Start/End: Complemental strand, 17158915 - 17158499
Alignment:
Q  26 catggggccggctgttacttctacttcagcagttgttacttctcagttgacagtccctatgcctaggacgtcattgtcgtcaacacctttcagctttcca 125  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  17158915 catggggccggttgttacttctacttcagcagttgttacttctcagttgacagtccctatgcccaagacgtcattgtcgtcaacacctttcagctttcca 17158816  T
Q  126 ctacataacgtgtttgacaacatttctagtgaaaagctgccactcgctacgccagtgtttgaaattgtttcccagtttgcgcacgatgaagtgcattctg 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17158815 ctacataacgtgtttgacaacatttctagtgaaaagctgccactcgctacgccagtgtttgaaattgtttcctagtttgcgcacgatgaagtgcattctg 17158716  T
Q  226 agagagtgggatcagtcgcatctgatatcgcgggaggagttggagaaccctgtggttgacgatgttactgcaacactctcggatgatctggagcataatc 325  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  17158715 agagagtgggatcagtcgcatccgatatcgcgggaggagttggagaaccctgtggttgacgatgttactgcgacactctcggatgatgtggagcataatc 17158616  T
Q  326 attcgcaccc-------ttggtggagagtcccaaggggggccatgagcatgtactacattcatcaattgttgagcacaatgacgtgcatgaggtatctct 418  Q
    ||||||||||       |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17158615 attcgcacccctagtagttggtggagagtcccaagggggaccatgagcatgtactacattcatcaattgttaagcacaatgacgtgcatgaggtatctct 17158516  T
Q  419 agaattgccacaggttc 435  Q
     |||| |||||||||||    
T  17158515 ggaatcgccacaggttc 17158499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 26 - 435
Target Start/End: Complemental strand, 11780496 - 11780083
Alignment:
Q  26 catggggccggctgttacttctacttcagcagttgttacttctcagttgacagtccctatgcctaggacgtcattgtcgtcaacacctttcagctttcca 125  Q
    ||||||| ||| ||||| |||||||||||||||||||||||||||  |||| ||||||||||| ||||| ||||||||||||||| ||||||||||||||    
T  11780496 catggggtcggttgttaattctacttcagcagttgttacttctcatatgacggtccctatgcccaggacatcattgtcgtcaacatctttcagctttcca 11780397  T
Q  126 ctacataacgtgtttgacaacatttctagtgaaaagctgccactcgctacgccagtgtttgaaattgtttcccagtttgcgcacgatgaagtgcattctg 225  Q
    ||||||||||||||||||| | ||||||||||  |||||| ||| |||||||||||||||||||||||||||| | ||  ||| |||||| |||||||||    
T  11780396 ctacataacgtgtttgacagcgtttctagtgaggagctgctactagctacgccagtgtttgaaattgtttccccgatt--gcatgatgaaatgcattctg 11780299  T
Q  226 agagagtgggatcagtcgcatctgatatcgcgggaggagttggagaaccctgtggttgacgatgttactgcaacactctcggatgatctggagcataatc 325  Q
    ||||||| | | |||||||||| || ||||||||||||||||||||||| ||| ||||||||||||||| |||| |||||||||||| |||| |||||||    
T  11780298 agagagt-gaagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtggaacataatc 11780200  T
Q  326 attcgcaccc-------ttggtggagagtcccaaggggggccatgagcatgtactacattcatcaattgttgagcacaatgacgtgcatgaggtatctct 418  Q
    |||||| |||        ||||||||||||| ||||| | |||||||||||||| |||||||||||||||||||||| |||| || ||||||||||||      
T  11780199 attcgcgcccacaggagctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaattgttgagcacgatgatgtacatgaggtatctaa 11780100  T
Q  419 agaattgccacaggttc 435  Q
     |||| |||||||||||    
T  11780099 ggaatcgccacaggttc 11780083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 176 - 290
Target Start/End: Complemental strand, 10424805 - 10424692
Alignment:
Q  176 gccagtgtttgaaattgtttcccagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatctgatatcgcgggaggagttggagaaccc 275  Q
    ||||||||| ||| |||||||||   ||||||||| ||| ||||||||||||||||| ||| || | |||||||| |||||||||||  |||||||||||    
T  10424805 gccagtgttagaatttgtttcccctgttgcgcacgttgacgtgcattctgagagagt-ggaacaattgcatctgacatcgcgggaggtattggagaaccc 10424707  T
Q  276 tgtggttgacgatgt 290  Q
     ||||| || |||||    
T  10424706 cgtggtggatgatgt 10424692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 82 - 412
Target Start/End: Original strand, 12101751 - 12102082
Alignment:
Q  82 ctatgcctaggacgtcattgtcgtcaacacctttcagctttccactacataacgtgtttgacaacatttctagtgaaaagctgccactcgctacgccagt 181  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||| ||  |||| ||||  || || | |||    
T  12101751 ctatgcctatgacgtcattgtcgtcaacatctttcagctttccactacataacgtgtttaacaatatttctagcgaggagctaccacaagcaacacgagt 12101850  T
Q  182 gtttgaaattgtttcccagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatctgatatcgcgggaggagttggagaaccctgtggt 281  Q
    |||||||||| ||||||   ||| ||||||||| |||||| |||||||||  ||| ||  | |||  || ||||||||||||||||||||||||  |||     
T  12101851 gtttgaaattatttccccaattgtgcacgatgacgtgcatcctgagagag-cggagcaaacacattcgacatcgcgggaggagttggagaaccccatggc 12101949  T
Q  282 tgacgatgttactgcaacactctcggatgatctggagcataatcattcgcaccc-------ttggtggagagtcccaaggggggccatgagcatgtacta 374  Q
    ||||||||||||| | | ||    |||  || |     |||||||||||| |||        ||||||||||||||||||| | | |||||||||||| |    
T  12101950 tgacgatgttactacgatacatgtggaacatat-----ataatcattcgcgcccccgggagctggtggagagtcccaagggtgcctatgagcatgtacca 12102044  T
Q  375 cattcatcaattgttgagcacaatgacgtgcatgaggt 412  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  12102045 cattcatcaattgttgagcacgatgacgtgcatgaggt 12102082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 228
Target Start/End: Complemental strand, 22171190 - 22171074
Alignment:
Q  112 ctttcagctttccactacataacgtgtttgacaacatttctagtgaaaagctgccactcgctacgccagtgtttgaaattgtttcccagtttgcgcacga 211  Q
    |||||||||||||| |||| || |||||||| || ||||||  || | || ||||||   ||| ||||||||| ||| |||||||||   ||||||| |     
T  22171190 ctttcagctttccattacacaatgtgtttgataaaatttctcctggagagttgccacatactatgccagtgttagaagttgtttcccctattgcgcatgt 22171091  T
Q  212 tgaagtgcattctgaga 228  Q
    ||| |||||||||||||    
T  22171090 tgatgtgcattctgaga 22171074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 228
Target Start/End: Complemental strand, 22172518 - 22172402
Alignment:
Q  112 ctttcagctttccactacataacgtgtttgacaacatttctagtgaaaagctgccactcgctacgccagtgtttgaaattgtttcccagtttgcgcacga 211  Q
    |||||||||||||| |||| || |||||||| || ||||||  || | || ||||||   ||| ||||||||| ||| |||||||||   ||||||| |     
T  22172518 ctttcagctttccattacacaatgtgtttgataaaatttctcctggagagttgccacatactatgccagtgttagaagttgtttcccctattgcgcatgt 22172419  T
Q  212 tgaagtgcattctgaga 228  Q
    ||| |||||||||||||    
T  22172418 tgatgtgcattctgaga 22172402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 9e-40; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 62 - 416
Target Start/End: Original strand, 14977470 - 14977830
Alignment:
Q  62 tacttctcagttgacagtccctatgcctaggacgtcattgtcgtcaacacctttcagctttccactacataacgtgtttgacaacatttctagtgaaaag 161  Q
    |||||||||| |||  |||||| |||| |||||||| ||||| |||||| |||| ||||| ||| |||| ||| ||||||| |  ||||||||||| |||    
T  14977470 tacttctcagatgatggtccctgtgcccaggacgtctttgtcatcaacatcttttagcttcccattacacaacatgtttgatagtatttctagtgagaag 14977569  T
Q  162 ctgccactcgctacgccagtgtttgaaattgtttcccagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatctgatatcgcgggag 261  Q
     |||||   ||||| |||||| ||||  |||| ||||   ||||||||||||| |||||||| |||||||| ||| |||||||||| || ||||||||||    
T  14977570 ttgccagaagctacaccagtgattgagtttgtgtccccagttgcgcacgatgacgtgcattccgagagagt-ggagcagtcgcatccgacatcgcgggag 14977668  T
Q  262 gagttggagaaccctgtggttgacgatgttactgcaacactctcggatgatctggagcataatcattcgcaccc-------ttggtggagagtcccaagg 354  Q
    ||| || ||| |||   |||||||||||||||||| || || ||  ||||| |||| ||||||||||||  |||        ||||||||||||||||||    
T  14977669 gaggtgcagatcccaacggttgacgatgttactgctacgctatcttatgatgtggaacataatcattcgaccccgcgggagctggtggagagtcccaagg 14977768  T
Q  355 ggggccatgagcatgtactacattcatcaattgttgagcacaatgacgtgcatgaggtatct 416  Q
    |   |||||||||||| | ||||||||| |||||| ||||  ||||| ||||||| ||||||    
T  14977769 gttcccatgagcatgttccacattcatccattgtttagcatgatgacatgcatgatgtatct 14977830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 94 - 275
Target Start/End: Complemental strand, 11776487 - 11776307
Alignment:
Q  94 cgtcattgtcgtcaacacctttcagctttccactacataacgtgtttgacaacatttctagtgaaaagctgccactcgctacgccagtgtttgaaattgt 193  Q
    |||| ||||||||||   |||||||||||||| ||||||| | ||||||||| ||||||  |||  || ||||||  | ||| |||||||| ||  ||||    
T  11776487 cgtctttgtcgtcaaactctttcagctttccattacataatgcgtttgacaaaatttctcatgaggagttgccacatgttacaccagtgttagaggttgt 11776388  T
Q  194 ttcccagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatctgatatcgcgggaggagttggagaaccc 275  Q
    |||||   ||| ||||||||| ||||||||||||||||| ||| |||| ||||| |  ||||||||||||||||||||||||    
T  11776387 ttcccctgttgtgcacgatgatgtgcattctgagagagt-ggagcagttgcatcagtcatcgcgggaggagttggagaaccc 11776307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 290
Target Start/End: Complemental strand, 9352516 - 9352405
Alignment:
Q  178 cagtgtttgaaattgtttcccagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatctgatatcgcgggaggagttggagaaccctg 277  Q
    ||||||| ||| |||||||||   ||||||||  |||  |||||||||||||||||| | |||| || ||||| |||||| |||| ||||||||||||||    
T  9352516 cagtgttagaatttgtttcccctgttgcgcacattgacatgcattctgagagagtggaa-cagttgcgtctgacatcgcgagaggtgttggagaaccctg 9352418  T
Q  278 tggttgacgatgt 290  Q
    |||| || |||||    
T  9352417 tggtggatgatgt 9352405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 94 - 423
Target Start/End: Complemental strand, 5782196 - 5781861
Alignment:
Q  94 cgtcattgtcgtcaacacctttcagctttccactacataacgtgtttgacaacatttctagtgaaaagctgccactcgctacgccagtgtttgaaattgt 193  Q
    |||| ||||||||||   |||||||||||||| |||| || |||||  | |  ||||||  |||  ||||||||   |||||||||||||| ||  ||||    
T  5782196 cgtctttgtcgtcaaactctttcagctttccattacacaatgtgttcaatagaatttctcctgaggagctgccatgtgctacgccagtgttagaggttgt 5782097  T
Q  194 ttcccagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatctgatatcgcgggaggagttggagaaccctgtggttgacgatgttac 293  Q
    |||||   ||||||||||||| ||||||||||||||||  ||| |||| ||||| || ||||||| |||||||||||||||    ||| || ||||||||    
T  5782096 ttcccttgttgcgcacgatgacgtgcattctgagagag-aggagcagttgcatcagacatcgcggaaggagttggagaaccacacggtggatgatgttac 5781998  T
Q  294 tgcaacactctcggatgatctggagcataatcattcgcaccc-------ttggtggagagtcccaaggggggccatgagcatgtactacattcatcaatt 386  Q
    ||  ||||| || |||||| |||| || |||||||||  |||        |||||||||||||||||||   |||||||| ||||  || ||||||  ||    
T  5781997 tgttacactttctgatgatgtggaacacaatcattcgatcccgcgggagctggtggagagtcccaagggttcccatgagcgtgtatcacgttcatccctt 5781898  T
Q  387 gttgagcacaatgacgtgcatgaggtatctctagaat 423  Q
     |||||||   ||| ||||||||||||||| ||||||    
T  5781897 attgagcattttgaggtgcatgaggtatctgtagaat 5781861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 99 - 275
Target Start/End: Complemental strand, 19069709 - 19069534
Alignment:
Q  99 ttgtcgtcaacacctttcagctttccactacataacgtgtttgacaacatttctagtgaaaagctgccactcgctacgccagtgtttgaaattgtttccc 198  Q
    ||||||||||   |||||||||||||| |||| || | ||||||||| ||||||  | |  |||||||||  |||||||||||||| ||  || ||||||    
T  19069709 ttgtcgtcaaactctttcagctttccattacacaatgcgtttgacaaaatttctcctaaggagctgccacgtgctacgccagtgttagaggttatttccc 19069610  T
Q  199 agtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatctgatatcgcgggaggagttggagaaccc 275  Q
       ||||||||||||| ||||||||||||||||  ||| | || ||||| || |||||| |||||||||||||||||    
T  19069609 ctgttgcgcacgatgacgtgcattctgagagag-aggagcggttgcatcagacatcgcgagaggagttggagaaccc 19069534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 290
Target Start/End: Original strand, 16311592 - 16311705
Alignment:
Q  176 gccagtgtttgaaattgtttcccagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatctgatatcgcgggaggagttggagaaccc 275  Q
    ||||||||| ||| |||||||||   ||||||||  ||| ||||||| ||||| ||||| | || | |||||||| ||||||||||| ||||||||||||    
T  16311592 gccagtgttagaatttgtttcccctgttgcgcacattgatgtgcattttgagaaagtggaa-caattgcatctgacatcgcgggaggtgttggagaaccc 16311690  T
Q  276 tgtggttgacgatgt 290  Q
     ||||| || |||||    
T  16311691 cgtggtggatgatgt 16311705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 290
Target Start/End: Original strand, 16313983 - 16314096
Alignment:
Q  176 gccagtgtttgaaattgtttcccagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatctgatatcgcgggaggagttggagaaccc 275  Q
    ||||||||| ||| |||||||||   ||||||||| ||| ||||||| ||||| ||||| | || | |||||||| ||| ||||||| ||||||||||||    
T  16313983 gccagtgttagaatttgtttcccctattgcgcacgttgatgtgcattttgagaaagtggaa-caattgcatctgacatcacgggaggtgttggagaaccc 16314081  T
Q  276 tgtggttgacgatgt 290  Q
     ||||| || |||||    
T  16314082 cgtggtggatgatgt 16314096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 290
Target Start/End: Original strand, 18488376 - 18488489
Alignment:
Q  176 gccagtgtttgaaattgtttcccagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatctgatatcgcgggaggagttggagaaccc 275  Q
    ||||||||| ||| |||||||||   ||||||||  ||| ||||||| ||||| ||||| | || | |||||||| ||||||||||| ||||||||||||    
T  18488376 gccagtgttagaatttgtttcccctgttgcgcacattgatgtgcattttgagaaagtggaa-caattgcatctgacatcgcgggaggtgttggagaaccc 18488474  T
Q  276 tgtggttgacgatgt 290  Q
     ||||| || |||||    
T  18488475 cgtggtggatgatgt 18488489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 290
Target Start/End: Original strand, 18492586 - 18492699
Alignment:
Q  176 gccagtgtttgaaattgtttcccagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatctgatatcgcgggaggagttggagaaccc 275  Q
    ||||||||| ||| |||||||||   ||||||||  ||| ||||||| ||||| ||||| | || | |||||||| ||||||||||| ||||||||||||    
T  18492586 gccagtgttagaatttgtttcccctgttgcgcacattgatgtgcattttgagaaagtggaa-caattgcatctgacatcgcgggaggtgttggagaaccc 18492684  T
Q  276 tgtggttgacgatgt 290  Q
     ||||| || |||||    
T  18492685 cgtggtggatgatgt 18492699  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 290
Target Start/End: Original strand, 18494977 - 18495090
Alignment:
Q  176 gccagtgtttgaaattgtttcccagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatctgatatcgcgggaggagttggagaaccc 275  Q
    ||||||||| ||| |||||||||   ||||||||| ||| ||||||| ||||| ||||| | || | |||||||| ||| ||||||| ||||||||||||    
T  18494977 gccagtgttagaatttgtttcccctattgcgcacgttgatgtgcattttgagaaagtggaa-caattgcatctgacatcacgggaggtgttggagaaccc 18495075  T
Q  276 tgtggttgacgatgt 290  Q
     ||||| || |||||    
T  18495076 cgtggtggatgatgt 18495090  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 290
Target Start/End: Complemental strand, 33041666 - 33041474
Alignment:
Q  97 cattgtcgtcaacacctttcagctttccactacataacgtgtttgacaacatttctagtgaaaagctgccactcgctacgccagtgtttgaaattgtttc 196  Q
    ||||||||||||   |||||||||||||| |||| || |||||||| |  ||||||  |||  || ||||||   ||| |||||||||  || ||| |||    
T  33041666 cattgtcgtcaaactctttcagctttccattacacaatgtgtttgatagaatttctcctgaggagttgccacatactatgccagtgttataatttgcttc 33041567  T
Q  197 ccagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatctgatatcgcgggaggagttggagaaccctgtggttgacgatgt 290  Q
    |    ||| ||||| ||| ||| |||||||||||| || || ||| |||| ||| ||||||||||| |||||||||||||||||| || |||||    
T  33041566 ctctgttgtgcacgttgacgtgtattctgagagaggggaat-agttgcatatgacatcgcgggaggtgttggagaaccctgtggtggatgatgt 33041474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 231
Target Start/End: Original strand, 29820419 - 29820551
Alignment:
Q  99 ttgtcgtcaacacctttcagctttccactacataacgtgtttgacaacatttctagtgaaaagctgccactcgctacgccagtgtttgaaattgtttccc 198  Q
    ||||||||||   |||||||||||||| |||| || |||||||| |  ||||||  |||  || ||||||   ||| ||||||||| ||| |||||||||    
T  29820419 ttgtcgtcaaactctttcagctttccattacacaatgtgtttgatagaatttctcctgaggagttgccacatactatgccagtgttagaatttgtttccc 29820518  T
Q  199 agtttgcgcacgatgaagtgcattctgagagag 231  Q
       ||||||||| |||  |||||||||||||||    
T  29820519 ttattgcgcacgttgacatgcattctgagagag 29820551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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