View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13079_low_5 (Length: 403)
Name: NF13079_low_5
Description: NF13079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13079_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 159 - 385
Target Start/End: Original strand, 35105323 - 35105552
Alignment:
| Q |
159 |
gctgtagactcatcacatgagtggaaagttgttcctgatatttggagatcttctgctgaaaaatatggtgataaagtagccttagtagatcaatatcatc |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35105323 |
gctgtagactcatcacatgagtggaaagttgttcctgatatttggagatcttctgctgaaaaatatggtgataaagtagccttagtagatcaatatcatc |
35105422 |
T |
|
| Q |
259 |
atcctccttcaactatcacatataatcaggtc---nnnnnnnnnnnagcactggaaaaaataagttactattttttatcctttatattgttcttatactt |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35105423 |
atcctccttcaactatcacatataatcaggtcttttttttttctttagcactagaaaaaataagttgctattttttatcctttatattgttcttatactt |
35105522 |
T |
|
| Q |
356 |
tgttttggcatctattgcagttggagcagg |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
35105523 |
tgttttggcatctattgcagttggagcagg |
35105552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 37942172 - 37942054
Alignment:
| Q |
11 |
cacagaccttgatactatctggtccaaaccagttagatccgaaccaaacaaagccgatcttaacaacttgttacctatttcttcatcgtcttcactacta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37942172 |
cacagaccttgatactatctggtccaaaccagttagatccgaaccaaacaaaaccgatcttaacaacttgttacctatttcttcatcgtcttcactacta |
37942073 |
T |
|
| Q |
111 |
cagaaccaaatcatgaatc |
129 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
37942072 |
cagaaccaaatcatgaatc |
37942054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 175 - 289
Target Start/End: Complemental strand, 38123143 - 38123029
Alignment:
| Q |
175 |
atgagtggaaagttgttcctgatatttggagatcttctgctgaaaaatatggtgataaagtagccttagtagatcaatatcatcatcctccttcaactat |
274 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||| || || ||||||||||||||||| || ||||||||||||||| |||||||||||||||| |
|
|
| T |
38123143 |
atgagtggaaagctgttcctgatatttggagaacttctgcagagaagtatggtgataaagtagctttggtagatcaatatcatgatcctccttcaactat |
38123044 |
T |
|
| Q |
275 |
cacatataatcaggt |
289 |
Q |
| |
|
||||| || ||||| |
|
|
| T |
38123043 |
gacatacaaacaggt |
38123029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 175 - 274
Target Start/End: Complemental strand, 38136355 - 38136256
Alignment:
| Q |
175 |
atgagtggaaagttgttcctgatatttggagatcttctgctgaaaaatatggtgataaagtagccttagtagatcaatatcatcatcctccttcaactat |
274 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||| || |||||||||||| | || | |||||| ||||||| |||||||||||||||| |
|
|
| T |
38136355 |
atgagtggaaaacagttcctgatatttggagaagttctgctgagaagtatggtgataaaattgctctcatagatccatatcatgatcctccttcaactat |
38136256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University