View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13079_low_8 (Length: 352)

Name: NF13079_low_8
Description: NF13079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13079_low_8
NF13079_low_8
[»] chr1 (10 HSPs)
chr1 (1-197)||(15373957-15374154)
chr1 (1-204)||(46358463-46358664)
chr1 (39-197)||(4530800-4530957)
chr1 (97-198)||(15374646-15374746)
chr1 (97-189)||(46357885-46357976)
chr1 (303-335)||(46358665-46358697)
chr1 (96-198)||(45597623-45597725)
chr1 (148-198)||(51610220-51610270)
chr1 (157-197)||(3788435-3788475)
chr1 (154-198)||(4626345-4626389)
[»] chr3 (9 HSPs)
chr3 (1-196)||(51492309-51492504)
chr3 (1-198)||(42146799-42146995)
chr3 (46-164)||(44385128-44385245)
chr3 (97-197)||(42147497-42147596)
chr3 (98-197)||(51491709-51491807)
chr3 (149-198)||(46580363-46580412)
chr3 (96-197)||(53714487-53714588)
chr3 (31-86)||(33968290-33968346)
chr3 (157-197)||(50306531-50306571)
[»] chr7 (8 HSPs)
chr7 (1-197)||(9379647-9379843)
chr7 (46-198)||(37693458-37693609)
chr7 (63-198)||(36661684-36661819)
chr7 (143-198)||(9378728-9378783)
chr7 (31-189)||(34996885-34997045)
chr7 (25-87)||(23624384-23624447)
chr7 (72-131)||(30915799-30915858)
chr7 (83-131)||(30402788-30402836)
[»] scaffold0016 (2 HSPs)
scaffold0016 (1-183)||(67842-68024)
scaffold0016 (97-197)||(67247-67346)
[»] chr8 (3 HSPs)
chr8 (203-335)||(44458876-44459014)
chr8 (203-335)||(44466409-44466547)
chr8 (39-197)||(511334-511491)
[»] chr2 (3 HSPs)
chr2 (39-197)||(6198795-6198951)
chr2 (82-197)||(5504344-5504458)
chr2 (157-197)||(26021919-26021959)
[»] chr6 (1 HSPs)
chr6 (24-94)||(25371271-25371342)
[»] chr4 (7 HSPs)
chr4 (72-198)||(5825333-5825457)
chr4 (72-132)||(20350402-20350462)
chr4 (147-198)||(55879793-55879844)
chr4 (144-198)||(49708720-49708774)
chr4 (31-87)||(38321177-38321233)
chr4 (79-123)||(6680273-6680317)
chr4 (24-87)||(34155500-34155564)
[»] chr5 (1 HSPs)
chr5 (157-197)||(30002864-30002904)


Alignment Details
Target: chr1 (Bit Score: 178; Significance: 6e-96; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 15374154 - 15373957
Alignment:
Q  1 tggacacatggacttggtggtggtttgctcgtggtgggtgagtggggatggaggagagaaaagggtgtgggagatagtgtgaaaaaatctagtggtgaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15374154 tggacacatggacttggtggtggtttgctcgtggtgggtgagtggggatggaggagagaaaaggatgtgggagatagtgtgaaaaaatctagtggtgaga 15374055  T
Q  101 gactatgataaaactatgctcttcatttgattcaaggattagaaatcaactttt-ccatggtgggaaaatatttccccatcccaccctaaatgccacc 197  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  15374054 gactatgataaaactatgctcttcatttgatccaaggattagaaatcaacttttcccatggtgggaaaatctttccccatcccaccctaaatgccacc 15373957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 46358463 - 46358664
Alignment:
Q  1 tggacacatggacttggtggtggtttgctcgtggtgggtgagtggggatggaggagagaaaagggtgtgggagatagtgtgaaaaaatctagtggtgaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||    
T  46358463 tggacacatggacttggtggtggtttgctcgtggtgggtgagtggggatggaggaga--aaagggtgtgggagatagtgtgaaaaaatttagtggtgaga 46358560  T
Q  101 gactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacctcc 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||    
T  46358561 gactatgataaaactatgctcttcatttgattaaaggattagaaatcaactttcccatggtgggaaaatcttttcccatcccaccctaaatgccacctcc 46358660  T
Q  201 gtag 204  Q
    ||||    
T  46358661 gtag 46358664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 4530800 - 4530957
Alignment:
Q  39 tgagtggggatggaggagagaaaagggtgtgggagatagtgtgaaaa-aatctagtggtgagagactatgataaaactatgctcttcatttgattcaagg 137  Q
    ||||| ||||||||||||||||  |||||||||| |||||||||||| |||||||||||||||| |||| |||||| |||| ||||||||||||  |||     
T  4530800 tgagttgggatggaggagagaa--gggtgtgggatatagtgtgaaaaaaatctagtggtgagagtctataataaaaatatggtcttcatttgatctaaga 4530897  T
Q  138 attagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacc 197  Q
     ||| ||||||||||| |||| ||||| || | ||||||   |||||||||||| |||||    
T  4530898 gttataaatcaactttcccattgtggggaattctttccctcacccaccctaaataccacc 4530957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 97 - 198
Target Start/End: Original strand, 15374646 - 15374746
Alignment:
Q  97 gagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccac 196  Q
    ||||||||||||||||| | || |||| |||| || ||| |  || ||||||||||  ||||||||||||||| ||||||| ||||||||||||||||||    
T  15374646 gagagactatgataaaagtgtgttctttatttaatccaatggcta-aaatcaacttgcccatggtgggaaaatctttccccttcccaccctaaatgccac 15374744  T
Q  197 ct 198  Q
    ||    
T  15374745 ct 15374746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 97 - 189
Target Start/End: Complemental strand, 46357976 - 46357885
Alignment:
Q  97 gagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaa 189  Q
    ||||||||||||||||| | || |||| |||| || ||| || || ||||||||||  ||||||||| ||||||||||||| |||||||||||    
T  46357976 gagagactatgataaaagtgtgttctttatttaatccaatgacta-aaatcaacttgcccatggtggaaaaatatttccccttcccaccctaa 46357885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 335
Target Start/End: Original strand, 46358665 - 46358697
Alignment:
Q  303 tctcactcaccactttatgatggcgtttgcaag 335  Q
    |||||||||||||||||||||||||||||||||    
T  46358665 tctcactcaccactttatgatggcgtttgcaag 46358697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 198
Target Start/End: Complemental strand, 45597725 - 45597623
Alignment:
Q  96 tgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgcca 195  Q
    |||||||||||||||| |||||| ||||  |||||| |||  |||| |||  | |||| | ||||||||||| | ||||||   ||||||||||||||||    
T  45597725 tgagagactatgataatactatggtctttctttgatccaaccattaaaaagtatctttcctatggtgggaaattctttccctcacccaccctaaatgcca 45597626  T
Q  196 cct 198  Q
    |||    
T  45597625 cct 45597623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 51610220 - 51610270
Alignment:
Q  148 aacttttccatggtgggaaaatatttccccatcccaccctaaatgccacct 198  Q
    |||||| |||||||||||||||||| | ||  |||||||||||||||||||    
T  51610220 aactttcccatggtgggaaaatattcctcctacccaccctaaatgccacct 51610270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 3788475 - 3788435
Alignment:
Q  157 atggtgggaaaatatttccccatcccaccctaaatgccacc 197  Q
    ||||||||||| | ||||||| |||||||||||||||||||    
T  3788475 atggtgggaaactctttccccttcccaccctaaatgccacc 3788435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 4626345 - 4626389
Alignment:
Q  154 tccatggtgggaaaatatttccccatcccaccctaaatgccacct 198  Q
    |||||||||||||| | ||||||  ||||||||||||||||||||    
T  4626345 tccatggtgggaaattttttccctctcccaccctaaatgccacct 4626389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 176; Significance: 9e-95; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 51492309 - 51492504
Alignment:
Q  1 tggacacatggacttggtggtggtttgctcgtggtgggtgagtggggatggaggagagaaaagggtgtgggagatagtgtgaaaaaatctagtggtgaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51492309 tggacacatggacttggtggtggtttgctcgtggtgggtgagtggggatggaggagagaaaagggtgtgggagatagtgtgaaaaaatctagtggtgaga 51492408  T
Q  101 gactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccac 196  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||    
T  51492409 gactatgataaaactatactcttcatttgatccaaggattagaaatcaactttcccatggtgggaaaatctttctccatcccaccctaaatgccac 51492504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 42146995 - 42146799
Alignment:
Q  1 tggacacatggacttggtggtggtttgctcgtggtgggtgagtggggatggaggagagaaaagggtgtgggagatagtgtgaaaaaatctagtggtgaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42146995 tggacacatggacttggtggtggtttgctcgtggtgggtgagtggggatggaggagagaaaagggtgtgggagatagtgtgaaaaaatctagtggtgaga 42146896  T
Q  101 gactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacct 198  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||    
T  42146895 gactatgataaaactatactcttcatttgatccaaggattagaaatcaactttcccatggtgggaaaatcttt-cccatcccaccctaaatgccacct 42146799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 46 - 164
Target Start/End: Original strand, 44385128 - 44385245
Alignment:
Q  46 ggatggaggagagaaaagggtgtgggagatagtgtgaaaa-aatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaa 144  Q
    |||||||||||||||  |||||||||| |||||||||||| |||||||||||||||| |||| ||||||||||| ||||||||||||  |||  ||| ||    
T  44385128 ggatggaggagagaa--gggtgtgggatatagtgtgaaaaaaatctagtggtgagagtctataataaaactatggtcttcatttgatctaagagttataa 44385225  T
Q  145 atcaacttttccatggtggg 164  Q
    ||||||||| |||| |||||    
T  44385226 atcaactttcccattgtggg 44385245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 42147497 - 42147596
Alignment:
Q  97 gagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccac 196  Q
    ||||||||||||||||| | || |||| |||| || ||| |  || ||||||||||  ||||||||||||||| ||||||| ||||||||||||||||||    
T  42147497 gagagactatgataaaagtgtgttctttatttaatccaatggcta-aaatcaacttgcccatggtgggaaaatctttccccttcccaccctaaatgccac 42147595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 51491807 - 51491709
Alignment:
Q  98 agagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacc 197  Q
    |||||||||||||||| | || |||| |||| || ||| |  || |||||||||| |||||||||| ||||| ||||||| ||||||||||||| |||||    
T  51491807 agagactatgataaaagtgtgttctttatttaatccaatggcta-aaatcaacttgtccatggtggaaaaatctttccccttcccaccctaaataccacc 51491709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 46580412 - 46580363
Alignment:
Q  149 acttttccatggtgggaaaatatttccccatcccaccctaaatgccacct 198  Q
    ||||||||||||| ||||||| |||| ||  |||||||||||||||||||    
T  46580412 acttttccatggtaggaaaatctttctcctacccaccctaaatgccacct 46580363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 197
Target Start/End: Complemental strand, 53714588 - 53714487
Alignment:
Q  96 tgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgcca 195  Q
    |||||||||||||||| |||||| ||||  |||||| |||   ||| |||  | |||| ||||||||||||| | ||||||   ||||||||||||||||    
T  53714588 tgagagactatgataatactatggtctttctttgatccaaccgttaaaaagtatctttcccatggtgggaaattctttccctcacccaccctaaatgcca 53714489  T
Q  196 cc 197  Q
    ||    
T  53714488 cc 53714487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 33968346 - 33968290
Alignment:
Q  31 gtggtgggtgagtggggatggaggagagaaaagggt-gtgggagatagtgtgaaaaa 86  Q
    |||||||||||||||||||||| |||||| || | | ||| ||||||||||||||||    
T  33968346 gtggtgggtgagtggggatggaagagagagaatgatggtgagagatagtgtgaaaaa 33968290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 50306531 - 50306571
Alignment:
Q  157 atggtgggaaaatatttccccatcccaccctaaatgccacc 197  Q
    ||||||||||| | ||||||| |||||||||||||||||||    
T  50306531 atggtgggaaactctttccccttcccaccctaaatgccacc 50306571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 9379647 - 9379843
Alignment:
Q  1 tggacacatggacttggtggtggtttgctcgtggtgggtgagtggggatggaggagagaaaagggtgtgggagatagtgtgaaaaaatctagtggtgaga 100  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9379647 tggacgcatggacttggttgtggtttgctcgtggtgggtgagtggggatggaggagagaaaatggtgtgggagatagtgtgaaaaaatctagtggtgaga 9379746  T
Q  101 gactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacc 197  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||| ||||| |||||||||||||||||||||||||||    
T  9379747 gactatgataaaactatgctcttcatttgatccaaggattagaaatcaactttcccatagtggaaaaatctttccccatcccaccctaaatgccacc 9379843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 46 - 198
Target Start/End: Original strand, 37693458 - 37693609
Alignment:
Q  46 ggatggaggagagaaaagggtgtgggagatagtgtgaaaa-aatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaa 144  Q
    |||||||||||||||  |||||||||| |||||||||||| |||||||||||||||| |||| ||||||||||| ||||||||||||  |||  ||| ||    
T  37693458 ggatggaggagagaa--gggtgtgggatatagtgtgaaaaaaatctagtggtgagagtctataataaaactatggtcttcatttgatctaagagttataa 37693555  T
Q  145 atcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacct 198  Q
    ||||||||| |||| ||||| || | ||||||   |||||||||||| ||||||    
T  37693556 atcaactttcccattgtggggaattctttccctcacccaccctaaataccacct 37693609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 63 - 198
Target Start/End: Complemental strand, 36661819 - 36661684
Alignment:
Q  63 gggtgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtg 162  Q
    |||||||| |||||||||||||||||||| ||||||||| |||| |||||| ||||||||||| |||||  || | | | |||   ||||| ||||||||    
T  36661819 gggtgtggaagatagtgtgaaaaaatctaatggtgagagtctataataaaattatgctcttcaattgatctaatggtcacaaaaatactttcccatggtg 36661720  T
Q  163 ggaaaatatttccccatcccaccctaaatgccacct 198  Q
    ||||| | ||||||   |||||||||||||||||||    
T  36661719 ggaaattctttccctcacccaccctaaatgccacct 36661684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 9378783 - 9378728
Alignment:
Q  143 aaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacct 198  Q
    ||||||||||| ||||||||| ||||| ||||||| ||||||||||||||||||||    
T  9378783 aaatcaactttcccatggtggaaaaatctttccccttcccaccctaaatgccacct 9378728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 189
Target Start/End: Complemental strand, 34997045 - 34996885
Alignment:
Q  31 gtggtgggtgagtggggatggaggagagaaaagggtg-tgggagatagtgtgaa---aaaatctagtggtgagagactatgataaaactatgctcttcat 126  Q
    ||||| |||||| |||||||||||||||| || |||| ||||||||||||||||   ||||||||||| ||| || |||| |||||| |||| | |||||    
T  34997045 gtggtaggtgag-ggggatggaggagagagaatggtggtgggagatagtgtgaaaaaaaaatctagtgttgaaagtctattataaaattatgttattcat 34996947  T
Q  127 ttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaa 189  Q
    || ||  || ||| | ||||| ||||| |||| |||||||| | |||| |  |||||||||||    
T  34996946 ttaatctaatgatcaaaaatc-actttcccatagtgggaaactctttctcattcccaccctaa 34996885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 23624384 - 23624447
Alignment:
Q  25 ttgctcgtggtgggtgagtggggatggaggagagaaaagggt-gtgggagatagtgtgaaaaaa 87  Q
    ||||| ||||||||||| |||||||||| |||||| || ||| ||| |||||||||||||||||    
T  23624384 ttgcttgtggtgggtgaatggggatggaagagagagaatggtggtgagagatagtgtgaaaaaa 23624447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 30915858 - 30915799
Alignment:
Q  72 agatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgat 131  Q
    |||||||| | |||||| ||||| ||||||| |||||||||| |||| ||||||||||||    
T  30915858 agatagtggggaaaaatatagtgttgagagagtatgataaaagtatggtcttcatttgat 30915799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 30402788 - 30402836
Alignment:
Q  83 aaaaatctagtggtgagagactatgataaaactatgctcttcatttgat 131  Q
    |||||| ||||| ||||||| |||||||||| |||| ||||||||||||    
T  30402788 aaaaatatagtgttgagagagtatgataaaagtatggtcttcatttgat 30402836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 67842 - 68024
Alignment:
Q  1 tggacacatggacttggtggtggtttgctcgtggtgggtgagtggggatggaggagagaaaagggtgtgggagatagtgtgaaaaaatctagtggtgaga 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  67842 tggacacatggacttggtggtggtttgttcgtggtgggtgagtggggatggaggagagaaaaggatgtgggagatagtgtgaaaaaatctagtggtgaga 67941  T
Q  101 gactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatccca 183  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| |||||||||||||    
T  67942 gactatgataaaactatgctcttcatttgatccaaggattagaaatcaactttcccaaggtgggaaaatctttccccatccca 68024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 67346 - 67247
Alignment:
Q  97 gagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccac 196  Q
    ||||||||||||||||| | || |||| |||| || ||| |  || ||||||||||  ||||||||||||||| ||||||| ||||||||||||||||||    
T  67346 gagagactatgataaaagtgtgttctttatttaatccaatggcta-aaatcaacttgcccatggtgggaaaatctttccccttcccaccctaaatgccac 67248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 203 - 335
Target Start/End: Original strand, 44458876 - 44459014
Alignment:
Q  203 agcgaactgatcaagtactactaaagtggtgatagtgtaactgtg------aaagccaaacatcaaacaaaaacaatacctagccgcttgtccccattcg 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44458876 agcgaactgatcaagtactactaaagtggtgatagtgtaactgtgaatgtgaaagccaaacatcaaacaaaaacaaaacctagccgcttgtccccattcg 44458975  T
Q  297 attctctctcactcaccactttatgatggcgtttgcaag 335  Q
    |||||||||||||||||||||||||||||||||||||||    
T  44458976 attctctctcactcaccactttatgatggcgtttgcaag 44459014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 203 - 335
Target Start/End: Original strand, 44466409 - 44466547
Alignment:
Q  203 agcgaactgatcaagtactactaaagtggtgatagtgtaactgtg------aaagccaaacatcaaacaaaaacaatacctagccgcttgtccccattcg 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44466409 agcgaactgatcaagtactactaaagtggtgatagtgtaactgtgaatgtgaaagccaaacatcaaacaaaaacaaaacctagccgcttgtccccattcg 44466508  T
Q  297 attctctctcactcaccactttatgatggcgtttgcaag 335  Q
    |||||||||||||||||||||||||||||||||||||||    
T  44466509 attctctctcactcaccactttatgatggcgtttgcaag 44466547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 511334 - 511491
Alignment:
Q  39 tgagtggggatggaggagagaaaagggtgtgggagatagtgtgaaaa-aatctagtggtgagagactatgataaaactatgctcttcatttgattcaagg 137  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||| |||| |||||| ||||||||||||||||| ||| |    
T  511334 tgagttgggatggaggagagaa--gggtgtgggagatagtgtgaaaaaaatctagtggtgagagcctataataaaattatgctcttcatttgatccaaag 511431  T
Q  138 attagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacc 197  Q
     ||| ||||||||||| | ||| ||||||| | |||||    ||||||||||||||||||    
T  511432 gttataaatcaactttcctatgatgggaaattctttccttcacccaccctaaatgccacc 511491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 6198795 - 6198951
Alignment:
Q  39 tgagtggggatggaggagagaaaagggtgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaagga 138  Q
    ||||| ||||||||||||||||  |||||||||||||||||| |||||||||||||||||||| |||| |||||| ||||||||| ||||||| ||| |     
T  6198795 tgagttgggatggaggagagaa--gggtgtgggagatagtgtaaaaaaatctagtggtgagagcctataataaaattatgctctttatttgatccaaagg 6198892  T
Q  139 ttagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacc 197  Q
    ||| ||||||||||| | ||| ||||||| | ||||||   ||||||||||||||||||    
T  6198893 ttataaatcaactttcctatgatgggaaattctttccctcacccaccctaaatgccacc 6198951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 197
Target Start/End: Complemental strand, 5504458 - 5504344
Alignment:
Q  82 aaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcc 181  Q
    ||||||||||||| ||| |  |||| |||||| |||| | ||||||||||  || | | | |||||| |||||| || |||||||| | ||||||| |||    
T  5504458 aaaaaatctagtgttgaaaatctattataaaattatgttattcatttgatctaatggtcaaaaatca-cttttctatagtgggaaactctttccccttcc 5504360  T
Q  182 caccctaaatgccacc 197  Q
    ||||||||||||||||    
T  5504359 caccctaaatgccacc 5504344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 26021919 - 26021959
Alignment:
Q  157 atggtgggaaaatatttccccatcccaccctaaatgccacc 197  Q
    ||||||||||| | ||||||| |||||||||||||||||||    
T  26021919 atggtgggaaactctttccccttcccaccctaaatgccacc 26021959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 25371342 - 25371271
Alignment:
Q  24 tttgctcgtggtgggtgagtggggatggaggagagaaaagggtg-tgggagatagtgtgaaaaaatctagtg 94  Q
    |||||| ||||||||||||| |||||||| |||||| || | || || ||||||||||||||||||||||||    
T  25371342 tttgcttgtggtgggtgagtagggatggaagagagagaatgatggtgagagatagtgtgaaaaaatctagtg 25371271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 5825457 - 5825333
Alignment:
Q  72 agatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatat 171  Q
    ||||||||| ||||||||||||| ||||||| || ||||| | | || || |||||||||  || | |||||||  |||||| | ||||||||||| | |    
T  5825457 agatagtgt-aaaaaatctagtgttgagagagtaggataataatgtgttcctcatttgatctaatggttagaaaa-aactttgctatggtgggaaactct 5825360  T
Q  172 ttccccatcccaccctaaatgccacct 198  Q
    |||||  ||||||||||||||||||||    
T  5825359 ttcccattcccaccctaaatgccacct 5825333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 20350462 - 20350402
Alignment:
Q  72 agatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgatt 132  Q
    |||||||| | |||||| ||||| ||||||| |||||||||| |||| |||||||||||||    
T  20350462 agatagtggggaaaaatatagtgttgagagagtatgataaaagtatgatcttcatttgatt 20350402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 55879844 - 55879793
Alignment:
Q  147 caacttttccatggtgggaaaatatttccccatcccaccctaaatgccacct 198  Q
    ||||||| ||||||||||||| ||||||||   |||||||||||||||||||    
T  55879844 caactttcccatggtgggaaattatttccctcacccaccctaaatgccacct 55879793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 49708720 - 49708774
Alignment:
Q  144 aatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacct 198  Q
    |||| ||||||||||||||||||| | ||||||   |||||||||||||||||||    
T  49708720 aatctacttttccatggtgggaaattctttccctcacccaccctaaatgccacct 49708774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 38321177 - 38321233
Alignment:
Q  31 gtggtgggtgagtggggatggaggagagaaaagggtg-tgggagatagtgtgaaaaaa 87  Q
    ||||| |||||| |||||||||||||||| || |||| ||||||||||||||||||||    
T  38321177 gtggtaggtgag-ggggatggaggagagagaatggtggtgggagatagtgtgaaaaaa 38321233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 6680273 - 6680317
Alignment:
Q  79 gtgaaaaaatctagtggtgagagactatgataaaactatgctctt 123  Q
    |||||||||||||||| |||||  |||||||||||||||| ||||    
T  6680273 gtgaaaaaatctagtgttgagaatctatgataaaactatgttctt 6680317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 34155500 - 34155564
Alignment:
Q  24 tttgctcgtggtgggtgagtggggatggaggagagaaaagggt-gtgggagatagtgtgaaaaaa 87  Q
    |||||| ||||||||||||||||| |||| |||||| || | | ||| |||||||||||||||||    
T  34155500 tttgcttgtggtgggtgagtgggggtggaagagagagaatgatggtgagagatagtgtgaaaaaa 34155564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 30002904 - 30002864
Alignment:
Q  157 atggtgggaaaatatttccccatcccaccctaaatgccacc 197  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  30002904 atggtgggaaaatctttccccttcccaccctaaatgccacc 30002864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University