View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13079_low_9 (Length: 268)
Name: NF13079_low_9
Description: NF13079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13079_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 3125712 - 3125804
Alignment:
| Q |
160 |
taaaggaagttcaccccaaaactccaaggagaaaaattctgaagagtagagacatgttcaaaggaggaagccctcttgaccttcatatatatg |
252 |
Q |
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| T |
3125712 |
taaaggaagttcaccccaaaactccaaggagaaaaattctgaagattagagacatgttcaaaggaggaagccctcttgaccttcatatatatg |
3125804 |
T |
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Target: chr1; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 3556321 - 3556229
Alignment:
| Q |
160 |
taaaggaagttcaccccaaaactccaaggagaaaaattctgaagagtagagacatgttcaaaggaggaagccctcttgaccttcatatatatg |
252 |
Q |
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| T |
3556321 |
taaaggaagttcaccccaaaactccaaggagaaaaattctgaagattagagacatgttcaaaggaggaagccctcttgaccttcatatatatg |
3556229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 3125561 - 3125643
Alignment:
| Q |
9 |
gagatgaagatagagtaggtgttgtgtattcaagccctttatatccaaaaagctgagctacaactctgcctcactcacacaat |
91 |
Q |
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| T |
3125561 |
gagatgaagcaagagtaggtgttgtgtattcaagtcctttatatccaaaaagctgagctacaactctgcctcactcacacaat |
3125643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 3556472 - 3556390
Alignment:
| Q |
9 |
gagatgaagatagagtaggtgttgtgtattcaagccctttatatccaaaaagctgagctacaactctgcctcactcacacaat |
91 |
Q |
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| T |
3556472 |
gagatgaagcaagagtaggtgttgtgtattcaagtcctttatatccaaaaagctgagctacaactctgcctcactcacacaat |
3556390 |
T |
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