View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1307_high_10 (Length: 528)
Name: NF1307_high_10
Description: NF1307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1307_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 13 - 486
Target Start/End: Complemental strand, 2619131 - 2618659
Alignment:
| Q |
13 |
aatatcaatttgttcgctacactataacgctgtagcactgacgtaaccgttatgttaagccaatgtttttcttttcagttagtaatcaacctctaggcgt |
112 |
Q |
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| T |
2619131 |
aatatcaatttgttcgctacactataacgctatagacttgacgtaaccgttatgttaagccattgtttttcttttcagttagtaagcaacctctaggcgt |
2619032 |
T |
|
| Q |
113 |
tggagttctgatacggcagagattgtccttgtattgaaattgtgcaacaagtttctgtaacttgggatggttttcagcttgaaaatagcctttgcaagtg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
2619031 |
tggagttctgatacggcagagattgtccttgtattgaaattgtgcaacaggtttctgtaacttgggattgttttcagcttgaaaatagcctttgcaacgg |
2618932 |
T |
|
| Q |
213 |
atcctgggtagataagagctttcactatgaaaagtggaaacacctcacttgcaatcaattgagaagatgtcaattctaatggtgtcttgcagattcccct |
312 |
Q |
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| T |
2618931 |
atcctgggtagataagagctttcactatgaaaagtggaaacacctcacttgcaatcaattgagaacatgtcaattctaacggtgtcttgcagattcccct |
2618832 |
T |
|
| Q |
313 |
tctgcatggaacactgaaagaaatgtagactttgttagtgtcaattagcactacaatacagtcacacaaagagcattgttttgattctttttaaattata |
412 |
Q |
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|||||||||||| |||||||||||| || |||||||||| |||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||| |
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| T |
2618831 |
tctgcatggaacgctgaaagaaatggagcctttgttagtatcaattagcactacaatacagttatacaaagagcattgttttgattc-ttttaaattata |
2618733 |
T |
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| Q |
413 |
actgaaatggaaattgaaagtattaaatcagaacttcatttcaagcttttgctgttagttattgcaagcttttg |
486 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2618732 |
actgaaatggaaattgaaagtattaaatcagaacttcatttcaagcttttcctgttagttattgcaagcttttg |
2618659 |
T |
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