View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1307_high_13 (Length: 462)
Name: NF1307_high_13
Description: NF1307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1307_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 17725115 - 17725051
Alignment:
| Q |
67 |
aagtgggtgtt-tttcattatatttccactgtaatcaaccttgcactagtaccaccaatcaattc |
130 |
Q |
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| T |
17725115 |
aagtgggtgttatttcattatatttccactgtaatcaaccttgcactagtaccaccaatcaattc |
17725051 |
T |
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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 236 - 294
Target Start/End: Complemental strand, 14458017 - 14457959
Alignment:
| Q |
236 |
tgtgcatgaacttgaaatttttccataaaatgttgattttcaacgataatagaacaagt |
294 |
Q |
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| T |
14458017 |
tgtgcatgaacttgaaatttttccataaaatgttgattttcaacgaaaatagaacaagt |
14457959 |
T |
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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 36480932 - 36480871
Alignment:
| Q |
5 |
ggtaaattattctgcaaaacaatattatgcaaaaatccagagcactccctcaccaaatcctc |
66 |
Q |
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| T |
36480932 |
ggtacattatcctgcaaaataatattatgcaaaaatacagagctctccttcaccaaatcctc |
36480871 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 41225996 - 41225946
Alignment:
| Q |
16 |
ctgcaaaacaatattatgcaaaaatccagagcactccctcaccaaatcctc |
66 |
Q |
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| T |
41225996 |
ctgcaaaacaatattatgcaaaaaaacagagcactccctcaccaactcctc |
41225946 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 45814495 - 45814551
Alignment:
| Q |
10 |
attattctgcaaaacaatattatgcaaaaatccagagcactccctcaccaaatcctc |
66 |
Q |
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| T |
45814495 |
attatcctgcaaaacaaaattatgctataatacagagcactccctcaccatatcctc |
45814551 |
T |
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