View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1307_high_14 (Length: 460)

Name: NF1307_high_14
Description: NF1307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1307_high_14
NF1307_high_14
[»] chr7 (12 HSPs)
chr7 (7-283)||(7306733-7307007)
chr7 (187-445)||(7327213-7327471)
chr7 (181-404)||(7312036-7312259)
chr7 (12-161)||(7327521-7327668)
chr7 (12-161)||(7311845-7311992)
chr7 (199-274)||(20455701-20455776)
chr7 (13-66)||(20414302-20414355)
chr7 (13-77)||(20455920-20455984)
chr7 (10-82)||(21219282-21219354)
chr7 (199-274)||(20414072-20414147)
chr7 (13-75)||(13888636-13888698)
chr7 (187-259)||(22533863-22533935)
[»] scaffold0128 (2 HSPs)
scaffold0128 (208-310)||(3315-3417)
scaffold0128 (187-298)||(24814-24925)
[»] chr5 (1 HSPs)
chr5 (214-332)||(42297270-42297388)
[»] chr1 (1 HSPs)
chr1 (25-111)||(31443574-31443660)
[»] chr2 (1 HSPs)
chr2 (187-267)||(2576076-2576156)


Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 7 - 283
Target Start/End: Original strand, 7306733 - 7307007
Alignment:
Q  7 gtcgtaagaataacccaacaagcagaccaacccattgcatgaaccaataacttcacgacaatccttgtcatgcaatagataataagggtccttaggaaag 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  7306733 gtcgtaagaataacccaacaagcagaccaacccattgcatgaaccaataacttcactacaatccttgtcatgcaatagataataaggatccttaggaaag 7306832  T
Q  107 gtgatatatatgacggttat--aacaaacgaccagctggaaaaggtacgaaacggtgcgggtaatagaatagcaaaaagtgggggtttcgtgcagatcta 204  Q
    |||||||    |||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  7306833 gtgatat----gacggttatctaacaaacgaccagatggaaaaggtacgaaacggtgcgggtaatagaatagcgaaaagtgcgggtttcgtgcagatcta 7306928  T
Q  205 ttgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatctgcatcaaag 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7306929 ttgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatctgcatcaaag 7307007  T

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Target: chr7; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 187 - 445
Target Start/End: Complemental strand, 7327471 - 7327213
Alignment:
Q  187 gggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatctgcatcaaagatc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7327471 gggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcagaaataatagtgttccaagacttacacacacacttgatctgcatcaaagatc 7327372  T
Q  287 ttactggaagccttgataagattttggccataacctcgtcggggagatctactgatggcggcagattggagtgagagcgaagacgctgcaagttcggtgg 386  Q
    |||||||||||||||||||||||| |||||||||||||||||||||   | |||| |||||||||||||| |||||||| |||||| ||||||||||  |    
T  7327371 ttactggaagccttgataagatttcggccataacctcgtcggggagtgtttctgacggcggcagattggattgagagcggagacgccgcaagttcggcag 7327272  T
Q  387 ctgtgtattcatcggagcaggctgtggcggagcagttgaaagttgacgatgctcgctat 445  Q
    ||| ||||||||| ||||  || |||  || |||| ||||||||||||| |||| ||||    
T  7327271 ctgcgtattcatcagagcgagcggtgtgggtgcagatgaaagttgacgacgctccctat 7327213  T

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Target: chr7; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 181 - 404
Target Start/End: Original strand, 7312036 - 7312259
Alignment:
Q  181 aagtgggggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatctgcatca 280  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||    
T  7312036 aagtgcgggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcagagataatagtgttccaagacttactcacacacttgatctgcatca 7312135  T
Q  281 aagatcttactggaagccttgataagattttggccataacctcgtcggggagatctactgatggcggcagattggagtgagagcgaagacgctgcaagtt 380  Q
    ||| |||||||||||||| ||||||||||| ||| || ||||| ||| ||||   ||||||||||||||||||||| |||||||| |||||| || ||||    
T  7312136 aagttcttactggaagccatgataagatttcggcgatgacctcatcgaggagggttactgatggcggcagattggattgagagcggagacgccgcgagtt 7312235  T
Q  381 cggtggctgtgtattcatcggagc 404  Q
    |||  |||||||||||||| ||||    
T  7312236 cggcagctgtgtattcatcagagc 7312259  T

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Target: chr7; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 12 - 161
Target Start/End: Complemental strand, 7327668 - 7327521
Alignment:
Q  12 aagaataacccaacaagcagaccaacccattgcatgaaccaataacttcacgacaatccttgtcatgcaatagataataagggtccttaggaaaggtgat 111  Q
    |||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7327668 aagaattacctaacaagcagaccaatccattgcatgaaccaataacttcacgacaatccttgtcatgcaatagataataaggatccttaggaaaggtgat 7327569  T
Q  112 atatatgacggttat--aacaaacgaccagctggaaaaggtacgaaacggtg 161  Q
    ||    || ||||||  || |||| |||||| ||||||||||||||||||||    
T  7327568 at----gagggttatctaataaactaccagcaggaaaaggtacgaaacggtg 7327521  T

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Target: chr7; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 7311845 - 7311992
Alignment:
Q  12 aagaataacccaacaagcagaccaacccattgcatgaaccaataacttcacgacaatccttgtcatgcaatagataataagggtccttaggaaaggtgat 111  Q
    ||||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||      
T  7311845 aagaatagcccaacaaacagaccaatccattgcaggaaccaataacttcacgacaatccttgtcatgcaacagataataaggatccttaggaaaggtg-- 7311942  T
Q  112 atatatgacggtta--taacaaacgaccagctggaaaaggtacgaaacggtg 161  Q
      ||||||||||||  ||| ||| ||||||| |||||||||| |||||||||    
T  7311943 --atatgacggttatctaataaatgaccagcaggaaaaggtatgaaacggtg 7311992  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 274
Target Start/End: Complemental strand, 20455776 - 20455701
Alignment:
Q  199 gatctattgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatct 274  Q
    |||||||| ||||| ||||||| |||||||| |||||| ||||  || |||||||||||||| |||||||| ||||    
T  20455776 gatctattaaggtgtattttgacgaatttagaatcggagataagggttttccaagacttacatacacacttcatct 20455701  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 20414355 - 20414302
Alignment:
Q  13 agaataacccaacaagcagaccaacccattgcatgaaccaataacttcacgaca 66  Q
    ||||||||| | |||||||||||| |||||||| ||||||| ||||||||||||    
T  20414355 agaataaccgagcaagcagaccaatccattgcaggaaccaacaacttcacgaca 20414302  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 20455984 - 20455920
Alignment:
Q  13 agaataacccaacaagcagaccaacccattgcatgaaccaataacttcacgacaatccttgtcat 77  Q
    ||||||||| | |||||| ||||| |||||||| |||||||||| || |||||||||||| ||||    
T  20455984 agaataaccaagcaagcaaaccaatccattgcaggaaccaataaatttacgacaatccttatcat 20455920  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 21219282 - 21219354
Alignment:
Q  10 gtaagaataacccaacaagcagaccaacccattgcatgaaccaataacttcacgacaatccttgtcatgcaat 82  Q
    ||||||||||||   ||| |||||||| |||||||| ||||||| |||||||| ||||||||| |||| ||||    
T  21219282 gtaagaataaccgcgcaaacagaccaatccattgcaggaaccaacaacttcacaacaatccttatcattcaat 21219354  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 274
Target Start/End: Complemental strand, 20414147 - 20414072
Alignment:
Q  199 gatctattgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatct 274  Q
    |||||||| ||||| |||||||  ||||||| |||||| ||||  || |||||||||||||| |||||||| ||||    
T  20414147 gatctattaaggtgtattttgacaaatttagaatcggagataagggttttccaagacttacatacacacttcatct 20414072  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 13888636 - 13888698
Alignment:
Q  13 agaataacccaacaagcagaccaacccattgcatgaaccaataacttcacgacaatccttgtc 75  Q
    ||||||||| | |||||||||||| |||||||| ||||||| ||| | |||||| ||||||||    
T  13888636 agaataaccgagcaagcagaccaatccattgcaggaaccaacaacatgacgacagtccttgtc 13888698  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 22533935 - 22533863
Alignment:
Q  187 gggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttac 259  Q
    ||||||| |||||| | ||| ||||||||||||  |||||||||||| || ||||| || ||||| |||||||    
T  22533935 gggtttcttgcagaccgattaaggtgcattttggcgaatttaggatcagagataatggttttccaggacttac 22533863  T

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Target: scaffold0128 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 208 - 310
Target Start/End: Complemental strand, 3417 - 3315
Alignment:
Q  208 aggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatctgcatcaaagatcttactggaagccttgataaga 307  Q
    ||||||||||||| ||||||||||||||| || | |||||||||||  | ||  ||| |||| ||||||||||| ||| | |||||||||| ||||| ||    
T  3417 aggtgcattttgacgaatttaggatcggagatgagagtgttccaagtatgacttacagacttcatctgcatcaatgatttgactggaagccatgatagga 3318  T
Q  308 ttt 310  Q
    |||    
T  3317 ttt 3315  T

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Target: scaffold0128; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 298
Target Start/End: Complemental strand, 24925 - 24814
Alignment:
Q  187 gggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatctgcatcaaagatc 286  Q
    |||||||||||||||||| | ||||||||||| ||||||  |||||  || || | ||| ||||| |||||||  || ||||| |||||||| | ||||     
T  24925 gggtttcgtgcagatctactaaggtgcattttaatgaatgaaggattagagatgagagttttccatgacttactgacgcacttcatctgcataagagatt 24826  T
Q  287 ttactggaagcc 298  Q
    |||| |||||||    
T  24825 ttaccggaagcc 24814  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 214 - 332
Target Start/End: Complemental strand, 42297388 - 42297270
Alignment:
Q  214 attttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatctgcatcaaagatcttactggaagccttgataagattttgg 313  Q
    ||||||| ||||||||||| ||| || | ||||||||||||  |||  ||||| || |||||||||| |||| | |||||||||| |||||| |||| ||    
T  42297388 attttgacgaatttaggattggagattagagtgttccaagaaatacttacacatttcatctgcatcagagatttcactggaagccatgataatatttcgg 42297289  T
Q  314 ccataacctcgtcggggag 332  Q
      |||| ||||||||||||    
T  42297288 tgataagctcgtcggggag 42297270  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 31443574 - 31443660
Alignment:
Q  25 caagcagaccaacccattgcatgaaccaataacttcacgacaatccttgtcatgcaatagataataagggtccttaggaaaggtgat 111  Q
    |||||||||||| |||||||| ||||||| |||| || |||| ||||| |||  |||| |||| ||||| ||||| |||| ||||||    
T  31443574 caagcagaccaatccattgcaggaaccaacaactccaggacagtccttctcaatcaattgatagtaaggatccttgggaagggtgat 31443660  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 267
Target Start/End: Complemental strand, 2576156 - 2576076
Alignment:
Q  187 gggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacac 267  Q
    ||||||||||| ||||  || ||||| | ||| |||||||||||||| ||||||||||  |||||||| || || ||||||    
T  2576156 gggtttcgtgccgatcgcttaaggtgaagtttaatgaatttaggatcagaaataatagatttccaagatttgcatacacac 2576076  T

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