View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1307_high_18 (Length: 367)
Name: NF1307_high_18
Description: NF1307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1307_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 176 - 289
Target Start/End: Original strand, 35040165 - 35040277
Alignment:
| Q |
176 |
ttttgcaggcactaattctagcaggtactagacactaccgcagcgacattgacctggtctgtttctttacttcttaacaatcctgaagttttaaacaaag |
275 |
Q |
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| T |
35040165 |
ttttgcaggcactaattctagcaggtac-agacactaccgcagcgacattgacctggtctgtttctttacttcttaacaatcctgaagttttaaacaaag |
35040263 |
T |
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| Q |
276 |
ccattcaagaatta |
289 |
Q |
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| T |
35040264 |
ccattcaagaatta |
35040277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 35039999 - 35040105
Alignment:
| Q |
10 |
attatactctgctaaggggttacagcgaaagatgaaggtataaacaactgaatgtcctaatagannnnnnnagttgcgacattataaatactcaactttc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35039999 |
attatactctgctaaggggttacagcgaaagatgaaggtataaacaactgaacgtcctaatagatttttttagttgcgacattataaatactcaactttc |
35040098 |
T |
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| Q |
110 |
aattatc |
116 |
Q |
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| T |
35040099 |
agttatc |
35040105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 176 - 289
Target Start/End: Original strand, 35032148 - 35032260
Alignment:
| Q |
176 |
ttttgcaggcactaattctagcaggtactagacactaccgcagcgacattgacctggtctgtttctttacttcttaacaatcctgaagttttaaacaaag |
275 |
Q |
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||||||||||| |||||||||| | ||| ||| |||||||||| |||||||| ||||| | ||||||||||||||||||||||||||| ||||||||| |
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| T |
35032148 |
ttttgcaggcattaattctagcggctac-agatactaccgcaggaacattgacatggtcactatctttacttcttaacaatcctgaagttctaaacaaag |
35032246 |
T |
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| Q |
276 |
ccattcaagaatta |
289 |
Q |
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| T |
35032247 |
ccattcaagaatta |
35032260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 176 - 289
Target Start/End: Original strand, 35026202 - 35026314
Alignment:
| Q |
176 |
ttttgcaggcactaattctagcaggtactagacactaccgcagcgacattgacctggtctgtttctttacttcttaacaatcctgaagttttaaacaaag |
275 |
Q |
| |
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|||||||||||||||||||||||| ||| ||||||||| |||| |||||||| ||| || | ||||||||||||||||||| ||| || ||||||||| |
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| T |
35026202 |
ttttgcaggcactaattctagcagctac-agacactacagcaggaacattgacttggactctatctttacttcttaacaatcgtgaggtcctaaacaaag |
35026300 |
T |
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| Q |
276 |
ccattcaagaatta |
289 |
Q |
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|||||| |||||| |
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| T |
35026301 |
tcattcatgaatta |
35026314 |
T |
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