View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1307_high_27 (Length: 265)
Name: NF1307_high_27
Description: NF1307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1307_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 22077130 - 22077357
Alignment:
| Q |
9 |
ttagaactgagtcctcatgcttttggtgttaggtggatannnnnnnagaattgttttgttccgatttataatgctaaaatcaggctgttctgtacctgct |
108 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
22077130 |
ttagaattgagtcctcatgcttttggtgttaggtggatatttttttagaattgttttgttccgatttataatgctaacaacaggctgttctgtacctgct |
22077229 |
T |
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| Q |
109 |
atatgagaaatcacacgggctgacttccagtcatgtaacatagattgagcacgtgtaaacgcggagttttgtgtttctgtagtgttattccataatttgt |
208 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22077230 |
atatgagaaatcacacgggctgacttcccgtcatgtaacatagattgagcacgtgtaaacgcggagttttgtgtttctgtagtgttattccataatttgt |
22077329 |
T |
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| Q |
209 |
tgtttctttgctttcaaatactccataa |
236 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
22077330 |
tgtttctttgctttcaaatactccataa |
22077357 |
T |
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