View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1307_low_1 (Length: 1379)

Name: NF1307_low_1
Description: NF1307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1307_low_1
NF1307_low_1
[»] chr2 (16 HSPs)
chr2 (1-1332)||(6915171-6916498)
chr2 (1081-1179)||(10543505-10543603)
chr2 (1081-1179)||(10471307-10471405)
chr2 (1081-1179)||(28106207-28106305)
chr2 (1099-1179)||(27966389-27966469)
chr2 (1081-1179)||(10859023-10859121)
chr2 (1192-1248)||(10492777-10492833)
chr2 (1191-1243)||(28105350-28105402)
chr2 (1185-1248)||(10463585-10463648)
chr2 (1185-1232)||(10507349-10507396)
chr2 (1197-1248)||(10860707-10860758)
chr2 (1186-1248)||(10474161-10474223)
chr2 (1192-1248)||(7476566-7476622)
chr2 (1197-1248)||(10848803-10848854)
chr2 (1100-1162)||(9081351-9081413)
chr2 (1191-1248)||(7478731-7478788)
[»] chr7 (14 HSPs)
chr7 (451-573)||(15039269-15039391)
chr7 (325-449)||(15038314-15038438)
chr7 (207-319)||(15038055-15038167)
chr7 (720-824)||(15040241-15040345)
chr7 (102-205)||(15037825-15037928)
chr7 (643-716)||(15040064-15040137)
chr7 (1081-1179)||(15044800-15044898)
chr7 (994-1084)||(15043971-15044061)
chr7 (1181-1252)||(15045570-15045641)
chr7 (829-884)||(15041840-15041895)
chr7 (934-996)||(15043792-15043854)
chr7 (40-102)||(15037676-15037738)
chr7 (587-641)||(15039923-15039977)
chr7 (1279-1332)||(15047553-15047606)
[»] chr8 (3 HSPs)
chr8 (671-740)||(43895529-43895598)
chr8 (671-740)||(44305953-44306022)
chr8 (1196-1247)||(44307022-44307073)
[»] chr5 (2 HSPs)
chr5 (800-878)||(35856854-35856932)
chr5 (1081-1179)||(33601026-33601124)


Alignment Details
Target: chr2 (Bit Score: 1243; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 1243; E-Value: 0
Query Start/End: Original strand, 1 - 1332
Target Start/End: Complemental strand, 6916498 - 6915171
Alignment:
Q  1 cgaatagccgtagaatacccaaacatattgttaagagggacatgagctgttatgacagaatcatcttcatcctgatcattgccaacaatcacaccttttc 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| |||||| ||||||||||||||||||||||||    
T  6916498 cgaatagccgtagaatacccaaacatattgttaagaggcacatgagctgtaatgacagaataatcttcgtcctgaacattgccaacaatcacaccttttc 6916399  T
Q  101 tcttgttgaggtcaccagcaacagctccctgaaattctgttggtactttcagttcaacaagcataacaggttctaatataactggtctggaagctgtgta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||    
T  6916398 tcttgttgaggtcaccagcaacagctccctgaaattctgttggtactttcagttca----gcataacaggttctaatataactggtctggaagctgtgta 6916303  T
Q  201 acactctctaaaagcatagatagaagccaacttaaaggcaagttcactggaatcaacatcatgagcagcaccatctgtcaagacaactcggagattttca 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6916302 acactctctaaaagcatagatagaagccaacttaaaggcaagttcactggaatcaacatcatgagcagcaccatctgtcaagacaactcggagattttga 6916203  T
Q  301 actggatgtccaatcaaggcaccagagttggcagcttctttaaaacctttctcaattgcagggaaaaaattcgatggaatagcttgaccaacaagcatgt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6916202 actggatgtccaatcaaggcaccagagttggcagcttctttaaaacctttctcaattgcagggaaaaaattcgatggaatagcttgaccaacaagcatgt 6916103  T
Q  401 tgtcaaattcaaacttagttcctgacccagcaggaagtggttcaatatatccaatcactcgtccatattgtccttgtcctccagattgcttcttatgtaa 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6916102 tgtcaaattcaaacttagttcctgacccagcaggaagtggttcaatatatccaatcactcgtccatattgtccttgccctccagattgcttcttatgtaa 6916003  T
Q  501 ataatcaaaatcagcacgttgagtaacagtttctctgaagtttacccggggctttccaactgtagcatcaaccccatactccatcttaatgcatttaaca 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6916002 ataatcaaaatcagcacgttgagtaacagtttctctgaagtttacccggggctttccaactgtagcatcaaccccatactccatcttaatgcgtttaaca 6915903  T
Q  601 taaatatctaagtgtagttctcccattccagaaatgattgtttgcccactctctgggtccaagctaacacggaaagtaggatcctctctttggaagcggt 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6915902 taaatatctaagtgtagttctcccattccagaaatgattgtttgcccactctctgggtccaagctaacacgaaaagtaggatcctctctttggaagcggt 6915803  T
Q  701 tcaaagcttttgaaaatttccctccagaatcttttgagactggctgtacagctaatgacatcacgggctcaggaacattcatagaagtcattgtgtattt 800  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915802 tcaaagcttttgaaaatttccctccagaatcttttgagactggctgtacagctaatgacatcacgggctcaggaacattcatagaagtcattgtgtattt 6915703  T
Q  801 aaccgacccatcagtaaatgtatcgccggatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctcttcaatgtcattcatctcatta 900  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6915702 aaccgacccatcagtaaatgtatcgctggatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctcttcaatgtcgttcatctcatta 6915603  T
Q  901 gaatgcatctcaactaagcgaggaaccttaattttctttccagtgctaacattaacaataaaatcacccttccgaatgacgccctcataaactcttagat 1000  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6915602 gaatgcatctgaactaagcgaggaaccttaattttctttccagtgctaacattaacaataaaatcacccttccgaatgacaccctcataaactcttagat 6915503  T
Q  1001 atgttaactgaccaaacttcctttgctccaacttgaaagccaatgctacaaggggcccatcgggacttccagtcagctgaaccttctcctcattcttgga 1100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6915502 atgttaactgaccaaacttcgtttgctccaacttgaaagccaatgctacaagaggcccatcgggacttccagtcagctgaaccttctcctcattcttgga 6915403  T
Q  1101 ttggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtacccccgtgtttttgacagcactaccc 1200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915402 ttggtcaagagcataattactaacttcaatcggacaaggcaaataactaactacaccatccagaagtggttgtacccccgtgtttttgacagcactaccc 6915303  T
Q  1201 atgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtcagcagctgaaatgttctcatcatcgctaagaaacgcttcag 1300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6915302 atgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtcagcagctgaaatgttctcatcatcactaagaaacgcttcag 6915203  T
Q  1301 caagtacatcatctacctctgacacaggttct 1332  Q
    ||||||||||||||||||||||||||| ||||    
T  6915202 caagtacatcatctacctctgacacagtttct 6915171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 1081 - 1179
Target Start/End: Original strand, 10543505 - 10543603
Alignment:
Q  1081 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 1179  Q
    ||||| |||||||||||||||||| | ||||||||||||||| ||||| | ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  10543505 accttttcctcattcttggattggacgagagcataattactagcttcagttggacacggcaaataattaagtacaccatccaaaagtagttgtaacccc 10543603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 1081 - 1179
Target Start/End: Original strand, 10471307 - 10471405
Alignment:
Q  1081 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 1179  Q
    ||||| ||||||||||| |||||| | ||||||||||||||| ||||| | ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  10471307 accttttcctcattcttagattggacgagagcataattactagcttcagttggacacggcaaataattaagtacaccatccaaaagtagttgtagcccc 10471405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 1081 - 1179
Target Start/End: Complemental strand, 28106305 - 28106207
Alignment:
Q  1081 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 1179  Q
    ||||| ||| ||| ||| ||||||||||||| |||||||||| ||||||| ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  28106305 accttttccccatgcttagattggtcaagagtataattactagcttcaattggacacggcaaataattaattacaccatccaaaagtagttgtagcccc 28106207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 6e-16
Query Start/End: Original strand, 1099 - 1179
Target Start/End: Original strand, 27966389 - 27966469
Alignment:
Q  1099 gattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 1179  Q
    ||||||||||||| |||||||||| ||||||| ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  27966389 gattggtcaagagtataattactagcttcaattggacacggcaaataattaattacaccatccaaaagtagttgtagcccc 27966469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1081 - 1179
Target Start/End: Original strand, 10859023 - 10859121
Alignment:
Q  1081 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 1179  Q
    ||||| ||| ||||||| |||| ||| |||| |||||||||||||||| | ||||| ||||||||| ||  ||||||||||| |||| |||||| ||||    
T  10859023 accttttccccattcttagatttgtcgagagaataattactaacttcagttggacagggcaaataattagttacaccatccaaaagtagttgtagcccc 10859121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1192 - 1248
Target Start/End: Original strand, 10492777 - 10492833
Alignment:
Q  1192 gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 1248  Q
    |||||||||||||| ||||||| ||||||  |||||||||| |||||||||||||||    
T  10492777 gcactacccatgaaaaccggtacaaatttatgtgctatggttgccctacgaattgct 10492833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1191 - 1243
Target Start/End: Complemental strand, 28105402 - 28105350
Alignment:
Q  1191 agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaa 1243  Q
    |||| ||||||||||||| |||||||| |||||||||||||| ||||||||||    
T  28105402 agcattacccatgaatactggtataaacttccgtgctatggtggccctacgaa 28105350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1185 - 1248
Target Start/End: Original strand, 10463585 - 10463648
Alignment:
Q  1185 tttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 1248  Q
    ||||| ||||||||||||||| |  |||||||||||||||||||| || || ||||||||||||    
T  10463585 tttgaaagcactacccatgaaaaatggtataaatttccgtgctatcgtggctctacgaattgct 10463648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1185 - 1232
Target Start/End: Original strand, 10507349 - 10507396
Alignment:
Q  1185 tttgacagcactacccatgaataccggtataaatttccgtgctatggt 1232  Q
    ||||| |||||| ||||||||||| |||||||||||||||||||||||    
T  10507349 tttgaaagcactgcccatgaatacgggtataaatttccgtgctatggt 10507396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1197 - 1248
Target Start/End: Original strand, 10860707 - 10860758
Alignment:
Q  1197 acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 1248  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||| ||||    
T  10860707 acccatgaatactggtataaatttccgtgctatggtgaccctacgaactgct 10860758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1186 - 1248
Target Start/End: Original strand, 10474161 - 10474223
Alignment:
Q  1186 ttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 1248  Q
    |||| |||||| ||||||||||  |||||||| |||||||||||||| |||||||||| ||||    
T  10474161 ttgaaagcactgcccatgaatattggtataaacttccgtgctatggtggccctacgaactgct 10474223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 1192 - 1248
Target Start/End: Complemental strand, 7476622 - 7476566
Alignment:
Q  1192 gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 1248  Q
    |||||||||||||| ||||||| ||||||| ||||||| || |||||| ||||||||    
T  7476622 gcactacccatgaaaaccggtacaaatttctgtgctatagttgccctatgaattgct 7476566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1197 - 1248
Target Start/End: Original strand, 10848803 - 10848854
Alignment:
Q  1197 acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 1248  Q
    |||||||||||| |||||||||||  |||||||||| |||||||||| ||||    
T  10848803 acccatgaatactggtataaatttgtgtgctatggtggccctacgaactgct 10848854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1100 - 1162
Target Start/End: Complemental strand, 9081413 - 9081351
Alignment:
Q  1100 attggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatcca 1162  Q
    ||||||| || |||||||||||  ||||||| ||||| ||||||||| ||| |||||||||||    
T  9081413 attggtcgagcgcataattacttgcttcaattggacacggcaaataattaagtacaccatcca 9081351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1191 - 1248
Target Start/End: Complemental strand, 7478788 - 7478731
Alignment:
Q  1191 agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 1248  Q
    |||||| |||||||| |||||||||||||| |||||| |||| |||||| ||| ||||    
T  7478788 agcactgcccatgaagaccggtataaatttgcgtgctctggttgccctaagaactgct 7478731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 6e-53; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 6e-53
Query Start/End: Original strand, 451 - 573
Target Start/End: Original strand, 15039269 - 15039391
Alignment:
Q  451 ccaatcactcgtccatattgtccttgtcctccagattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacccggg 550  Q
    |||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15039269 ccaatcacccgtccatattgtccttgccctccggattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacacggg 15039368  T
Q  551 gctttccaactgtagcatcaacc 573  Q
    |||||||||||||||||||||||    
T  15039369 gctttccaactgtagcatcaacc 15039391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 325 - 449
Target Start/End: Original strand, 15038314 - 15038438
Alignment:
Q  325 gagttggcagcttctttaaaacctttctcaattgcagggaaaaaattcgatggaatagcttgaccaacaagcatgttgtcaaattcaaacttagttcctg 424  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  15038314 gagttggcagcttctataaaacctttctcaattgcagcgaaaaaatttgatggaatagcttgaccaacaagcatgttttcaaattcaaacttagtttctg 15038413  T
Q  425 acccagcaggaagtggttcaatata 449  Q
    |||||||||| ||||||||||||||    
T  15038414 acccagcagggagtggttcaatata 15038438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 207 - 319
Target Start/End: Original strand, 15038055 - 15038167
Alignment:
Q  207 tctaaaagcatagatagaagccaacttaaaggcaagttcactggaatcaacatcatgagcagcaccatctgtcaagacaactcggagattttcaactgga 306  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  15038055 tctaaaagcatagatagaagccatcttaaaggcaagctcactggaatcaacagcatgagcagcaccatctgtcaagacaactcggagattttcaacggga 15038154  T
Q  307 tgtccaatcaagg 319  Q
    |||||||| ||||    
T  15038155 tgtccaattaagg 15038167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 720 - 824
Target Start/End: Original strand, 15040241 - 15040345
Alignment:
Q  720 ccctccagaatcttttgagactggctgtacagctaatgacatcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagtaaat 819  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| |||||||| ||||||||||||||     
T  15040241 ccctccagaatcttttgagactggctgtacagctaatgacatcacaggctcaggaacactcattgaagtcattgtatatttaacagacccatcagtaaaa 15040340  T
Q  820 gtatc 824  Q
    |||||    
T  15040341 gtatc 15040345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 102 - 205
Target Start/End: Original strand, 15037825 - 15037928
Alignment:
Q  102 cttgttgaggtcaccagcaacagctccctgaaattctgttggtactttcagttcaacaagcataacaggttctaatataactggtctggaagctgtgtaa 201  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||| || ||||||||||||||||| |||||||||  |||||||||||| ||||||    
T  15037825 cttgttgaggtcaccagcaacagctccctgaaattcatttggtacttttagctcaacaagcataacaggctctaatatagttggtctggaagcagtgtaa 15037924  T
Q  202 cact 205  Q
    ||||    
T  15037925 cact 15037928  T

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Target: chr7; HSP #6
Raw Score: 70; E-Value: 7e-31
Query Start/End: Original strand, 643 - 716
Target Start/End: Original strand, 15040064 - 15040137
Alignment:
Q  643 tgcccactctctgggtccaagctaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaa 716  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15040064 tgcccactctctgggtccaagccaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaa 15040137  T

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Target: chr7; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 1081 - 1179
Target Start/End: Original strand, 15044800 - 15044898
Alignment:
Q  1081 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 1179  Q
    ||||||||||| || || ||||||||||| ||||||||| |||||||||| ||||| ||||||||| ||| ||||||||||||||||||||||| ||||    
T  15044800 accttctcctccttattagattggtcaagggcataattattaacttcaattggacatggcaaataactaagtacaccatccagaagtggttgtatcccc 15044898  T

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Target: chr7; HSP #8
Raw Score: 55; E-Value: 6e-22
Query Start/End: Original strand, 994 - 1084
Target Start/End: Original strand, 15043971 - 15044061
Alignment:
Q  994 cttagatatgttaactgaccaaacttcctttgctccaacttgaaagccaatgctacaaggggcccatcgggacttccagtcagctgaacct 1084  Q
    |||| |||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||| | |||| ||||| |||||    
T  15043971 cttaaatatgttagctgaccaaacttactttcctccaacttgaaagccaatgctacaaggggcccatcaggattaccaggcagctcaacct 15044061  T

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Target: chr7; HSP #9
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 1181 - 1252
Target Start/End: Original strand, 15045570 - 15045641
Alignment:
Q  1181 tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccct 1252  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || | ||||||||||||||| |||||||    
T  15045570 tgtttttgaaagcactacccatgaataccggtataaatttccgcgccacggtagccctacgaatggctccct 15045641  T

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Target: chr7; HSP #10
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 829 - 884
Target Start/End: Original strand, 15041840 - 15041895
Alignment:
Q  829 gatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctcttcaat 884  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  15041840 gatgcacaatcaacaccaaatacagcaactatttggccagcatgagcctcatcaat 15041895  T

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Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 934 - 996
Target Start/End: Original strand, 15043792 - 15043854
Alignment:
Q  934 ttctttccagtgctaacattaacaataaaatcacccttccgaatgacgccctcataaactctt 996  Q
    ||||| |||||| ||||||||| ||| ||||||||||||||||||||||||||||||| ||||    
T  15043792 ttcttgccagtgttaacattaataatgaaatcacccttccgaatgacgccctcataaattctt 15043854  T

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Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 15037676 - 15037738
Alignment:
Q  40 acatgagctgttatgacagaatcatcttcatcctgatcattgccaacaatcacaccttttctc 102  Q
    ||||||||| | |||||||| |||||| |||||||||||||||||||||||| ||| ||||||    
T  15037676 acatgagctataatgacagagtcatctccatcctgatcattgccaacaatcataccctttctc 15037738  T

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Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 587 - 641
Target Start/End: Original strand, 15039923 - 15039977
Alignment:
Q  587 taatgcatttaacataaatatctaagtgtagttctcccattccagaaatgattgt 641  Q
    |||||| || |||||| ||||||||||| |||||||||||||||||||| |||||    
T  15039923 taatgcgttcaacatagatatctaagtgcagttctcccattccagaaataattgt 15039977  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1279 - 1332
Target Start/End: Original strand, 15047553 - 15047606
Alignment:
Q  1279 tcatcgctaagaaacgcttcagcaagtacatcatctacctctgacacaggttct 1332  Q
    ||||| |||||||||||||| ||||||| |||||| ||||||||||||| ||||    
T  15047553 tcatcactaagaaacgcttccgcaagtatatcatcaacctctgacacagtttct 15047606  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 671 - 740
Target Start/End: Original strand, 43895529 - 43895598
Alignment:
Q  671 ggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttttgagac 740  Q
    ||||||||||||||| |||||| || |  ||||||||  ||||||||| |||||||||||||||||||||    
T  43895529 ggaaagtaggatcctttctttgaaaaccattcaaagcagttgaaaattgccctccagaatcttttgagac 43895598  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 671 - 740
Target Start/End: Original strand, 44305953 - 44306022
Alignment:
Q  671 ggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttttgagac 740  Q
    ||||||||||||||| |||||| || |  ||||||||  ||||||||| |||||||||||||||||||||    
T  44305953 ggaaagtaggatcctttctttgaaaaccattcaaagcacttgaaaattgccctccagaatcttttgagac 44306022  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1196 - 1247
Target Start/End: Original strand, 44307022 - 44307073
Alignment:
Q  1196 tacccatgaataccggtataaatttccgtgctatggtagccctacgaattgc 1247  Q
    |||||||||| |  |||| |||||||||||||||||| ||||||||||||||    
T  44307022 tacccatgaaaattggtacaaatttccgtgctatggttgccctacgaattgc 44307073  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 800 - 878
Target Start/End: Complemental strand, 35856932 - 35856854
Alignment:
Q  800 taaccgacccatcagtaaatgtatcgccggatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctc 878  Q
    |||| ||||||||||||||||| || || | ||||||||||||| || ||||| |||| ||||| |||||||| |||||    
T  35856932 taacagacccatcagtaaatgtttctcctggtgcacaatcaacatcacatacaacaacaatttgtccagcatgagcctc 35856854  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1081 - 1179
Target Start/End: Original strand, 33601026 - 33601124
Alignment:
Q  1081 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 1179  Q
    ||||| ||||||||||| ||||||   |||||||||||| |  ||||| | ||||| ||||||| | |||  |||||||||| ||||||||||| ||||    
T  33601026 accttttcctcattcttagattggatgagagcataattagttgcttcagttggacacggcaaattattaagcacaccatccaaaagtggttgtagcccc 33601124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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