View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1307_low_10 (Length: 572)
Name: NF1307_low_10
Description: NF1307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1307_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 11 - 493
Target Start/End: Complemental strand, 34573835 - 34573343
Alignment:
| Q |
11 |
caaaggtagtggattttgttggtgaggtacggattccggttggtt---------ttgaggataataagcaaatattgccacccacttggttcgagcttca |
101 |
Q |
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| T |
34573835 |
caaaggtagtggattttgttggtgaggtacggattccggttggttcggttggttttgaggataataagcaaatattgccacccacttggttcgagcttca |
34573736 |
T |
|
| Q |
102 |
atgttctaacaaaaacggcaaatttttcaacaaattttgtggtttgtttccttgtattagatgatcatgtttttgtatatgatattatgctgattttgtt |
201 |
Q |
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| T |
34573735 |
atgttctaacaagaacggcaaatttttcaacaaattttgtggtttgtttccttgtattagatgatcatgtttttgtatatgatattatgctgattttgtt |
34573636 |
T |
|
| Q |
202 |
ttcaatgacaaatgttagtannnnnnngaataataaatgtcagtactttaatggttatgttagtattttctctgtcgtcaagattcaaaccc-tagacct |
300 |
Q |
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| T |
34573635 |
ttcaatgacaaatgttagtatttttttgaataataaatgtcagtactttaatggttatgttagtattttctctgtcgtcaagattcaaacccctagacct |
34573536 |
T |
|
| Q |
301 |
ttaactcatcatcgcatataatccattcactcaagctagtgagctacccggcatgaattataaatgcttcctgggcaagttttcatcatattgagaacat |
400 |
Q |
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| T |
34573535 |
ttaactcatcatcacatttaatccattcactcaagctagtgagctacccggcatgaattataaatgcttcctgggcaagttttcatcatattgagaacat |
34573436 |
T |
|
| Q |
401 |
atactagtaaaagttgattattttccctattataaattgtagaatgatgaaactttgctagatagcattatttcaacgttgagtggctcctag |
493 |
Q |
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| T |
34573435 |
atactagtaaaagttgattattttccctattataaattgtagaatgatgaaactttgctagatagcattatttcaacgttgagtggctcctag |
34573343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 543
Target Start/End: Complemental strand, 34573320 - 34573284
Alignment:
| Q |
507 |
gtagtgtttcaatagcatacaccttgatctatatgca |
543 |
Q |
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| T |
34573320 |
gtagtgtttcaatagcatacaacttgaactatatgca |
34573284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 47774069 - 47774140
Alignment:
| Q |
236 |
aaatgtcagtactttaatggttatgttagtattttctctgtcgtcaagattcaaaccctagacctttaactc |
307 |
Q |
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| T |
47774069 |
aaatgttagtatgttaattgttatgttagtattttctcccttgccaggattcaaaccctggacctttaactc |
47774140 |
T |
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