View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1307_low_11 (Length: 529)
Name: NF1307_low_11
Description: NF1307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1307_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 88 - 500
Target Start/End: Original strand, 12080195 - 12080589
Alignment:
| Q |
88 |
ccattcttctcaacttctgacttaggagttgatgctggtttaatgcctcgctttttaatcaaagaaatcacactcgatagaaaaatagaagatatcaccg |
187 |
Q |
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| T |
12080195 |
ccattcttctcaacttctgacttaggagttgatgctggtttaatgcctcgctttttaatcaaagaaatcacacttgatagaaaaatagaagatatcaccg |
12080294 |
T |
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| Q |
188 |
atgatccaccaaagaaaggacattgtagatgatggcaataaagtaaaatcatgatcaaggaatagaaataggtcaaaatgaagctgcaacaaactgttac |
287 |
Q |
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| T |
12080295 |
atgatccaccaaagaaaggacattgtaga----------------------tgatcaaggaatagcaataggtcaaaatgaagctgcaacaaactgttac |
12080372 |
T |
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| Q |
288 |
agataataaattataattagaatacggaaataatatgatgatttgacagaa----taatgaacagatgcaaaaaattgcaatcagatccaattcatacct |
383 |
Q |
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| T |
12080373 |
agataataaattataattagaatacggaagtaatatgatgatttgacagaaattataatgaacagatgcaaaaaagtgcaatcagatccaattcatacct |
12080472 |
T |
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| Q |
384 |
gtgcgtagttaaaccaaatcagagttttgtctacacttgattggttcgatttgagttgatatatgaatgacggtgtaatcagtataataagttgagcagc |
483 |
Q |
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| T |
12080473 |
gtgcgtagttaaaccaaagcagagttttgtctatatttgattggttcgatttgagttgatatatgaatgacggtggaatcagtataataagttgagcagc |
12080572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 201 - 338
Target Start/End: Original strand, 12890413 - 12890550
Alignment:
| Q |
201 |
gaaaggacattgtagatgatggcaataaagtaaaatcatgatcaaggaatagaaataggtcaaaatgaagctgcaacaaactgttacagataataaatta |
300 |
Q |
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| T |
12890413 |
gaaaggacatagtagacgacggcaataaattaaactcatgatcaaggaatagcatcaggtcacaatgaacctgcaacaagttgttcccggtaataaatta |
12890512 |
T |
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| Q |
301 |
taattagaatacggaaataatatgatgatttgacagaa |
338 |
Q |
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| T |
12890513 |
aaataagaacacagaaataataaaaggatttgacagaa |
12890550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 88 - 268
Target Start/End: Original strand, 12072286 - 12072475
Alignment:
| Q |
88 |
ccattcttctcaacttctgacttaggagttgatgctggtttaatgcctcgctttttaatcaaagaaatcacactcg--------atagaaaaatagaa-g |
178 |
Q |
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| T |
12072286 |
ccatccttctcaacttctgacttaggagccaatcctggtcaaatttctcgctttttaatcaaagaaatcacagtcgatattgacatagaaaaatagaacg |
12072385 |
T |
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| Q |
179 |
atatcaccgatgatccaccaaagaaaggacattgtagatgatggcaataaagtaaaatcatgatcaaggaatagaaataggtcaaaatga |
268 |
Q |
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| T |
12072386 |
atgtcaacaatgaaccggcaaagaaaggacatcgttgatgacgacagtaaattaaaatcatgatcaaggaagagcaacagggcaaaatga |
12072475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 322
Target Start/End: Original strand, 14631599 - 14631790
Alignment:
| Q |
139 |
tttttaatcaaagaaatcacactcg--------atagaaaaatagaa-gatatcaccgatgatccaccaaagaaaggacattgtagatgatggcaataaa |
229 |
Q |
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| T |
14631599 |
tttttaatcaaagaaatcacactcgttgacaaaatataaaaattgaacgatttcaccaataaaccaccaaagaaaggacatagtaggtgacgccaagaaa |
14631698 |
T |
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| Q |
230 |
gtaaaatcatgatcaaggaatagaaataggtcaaaatgaagctgcaacaaactgttacagataataaattataattagaatacggaaataata |
322 |
Q |
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| T |
14631699 |
ttaaaatcatgatgaaggaagagcatcaggtcacaatgaacctgcaacaagttgttccaga-aaaaaattaaaataagaacacggaagtaata |
14631790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 183 - 401
Target Start/End: Complemental strand, 14664800 - 14664575
Alignment:
| Q |
183 |
caccgatgatccaccaaagaaaggacattgtagatgatggcaataaagtaaaatcatgatcaaggaatagaaataggtcaaaatgaagctgcaacaaact |
282 |
Q |
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| T |
14664800 |
caccaatgaaccaccaacgaaaggacatcgtacatgataacaagaaattaaaatcacgaagaaggactatcatcaggtcacaattaagcagcaacaagct |
14664701 |
T |
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| Q |
283 |
gttacagataataa---attataattagaatacggaaataatatgatgatttgacagaat----aatgaacagatgcaaaaaattgcaatcagatccaat |
375 |
Q |
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| T |
14664700 |
ggtacatataataagaaattaaaattagaacacggaaataataagttgattttgcaaaaattaaaatgaagagatgacaaaaagtggaatcagatccaat |
14664601 |
T |
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| Q |
376 |
tcatacctgtgcgtagttaaaccaaa |
401 |
Q |
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| T |
14664600 |
gcaaacctgtgtgtagttaaaccaaa |
14664575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 512
Target Start/End: Original strand, 12072559 - 12072596
Alignment:
| Q |
475 |
ttgagcagcagcggcagataattgtgtagtgaagagca |
512 |
Q |
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| T |
12072559 |
ttgagcagcagcggcagataattgtggagtggagagca |
12072596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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