View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1307_low_13 (Length: 518)
Name: NF1307_low_13
Description: NF1307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1307_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 2619133 - 2618659
Alignment:
| Q |
1 |
agaatatcaatttgttcgctacactataacgctgtagcactgacgtaaccgttatgttaagccaatgtttttcttttcagttagtaatcaacctctaggc |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
2619133 |
agaatatcaatttgttcgctacactataacgctatagacttgacgtaaccgttatgttaagccattgtttttcttttcagttagtaagcaacctctaggc |
2619034 |
T |
|
| Q |
101 |
gttggagttctgatacggcagagattgtccttgtattgaaattgtgcaacaagtttctgtaacttgggatggttttcagcttgaaaatagcctttgcaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2619033 |
gttggagttctgatacggcagagattgtccttgtattgaaattgtgcaacaggtttctgtaacttgggattgttttcagcttgaaaatagcctttgcaac |
2618934 |
T |
|
| Q |
201 |
tgatcctgggtagataagagctttcactatgaaaagtggaaacacctcacttgcaatcaattgagaagatgtcaattctaatggtgtcttgcagattccc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
2618933 |
ggatcctgggtagataagagctttcactatgaaaagtggaaacacctcacttgcaatcaattgagaacatgtcaattctaacggtgtcttgcagattccc |
2618834 |
T |
|
| Q |
301 |
cttctgcatggaacactgaaagaaatgtagactttgttagtgtcaattagcactacaatacagtcacacaaagagcattgttttgattctttttaaatta |
400 |
Q |
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|||||||||||||| |||||||||||| || |||||||||| |||||||||||||||||||||| | |||||||||||||||||||||| |||||||||| |
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| T |
2618833 |
cttctgcatggaacgctgaaagaaatggagcctttgttagtatcaattagcactacaatacagttatacaaagagcattgttttgattc-ttttaaatta |
2618735 |
T |
|
| Q |
401 |
taactgaaatggaaattgaaagtattaaatcagaacttcatttcaagcttttgctgttagttattgcaagcttttg |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
2618734 |
taactgaaatggaaattgaaagtattaaatcagaacttcatttcaagcttttcctgttagttattgcaagcttttg |
2618659 |
T |
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