View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1307_low_14 (Length: 491)

Name: NF1307_low_14
Description: NF1307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1307_low_14
NF1307_low_14
[»] chr2 (16 HSPs)
chr2 (12-323)||(31096172-31096481)
chr2 (320-379)||(31096498-31096557)
chr2 (49-90)||(13869244-13869285)
chr2 (175-294)||(25790158-25790274)
chr2 (250-294)||(43259941-43259985)
chr2 (251-294)||(4350797-4350840)
chr2 (50-88)||(14316970-14317008)
chr2 (252-294)||(30990359-30990401)
chr2 (173-227)||(42131647-42131701)
chr2 (254-299)||(11063303-11063348)
chr2 (257-294)||(40837357-40837394)
chr2 (66-114)||(1742128-1742176)
chr2 (47-79)||(13056044-13056076)
chr2 (250-294)||(22878204-22878248)
chr2 (250-294)||(40759266-40759310)
chr2 (250-294)||(43036797-43036841)
[»] chr6 (23 HSPs)
chr6 (250-294)||(33068522-33068566)
chr6 (250-294)||(13908346-13908390)
chr6 (250-304)||(7351581-7351635)
chr6 (255-305)||(31624371-31624421)
chr6 (250-294)||(13907971-13908015)
chr6 (251-294)||(7785664-7785707)
chr6 (47-86)||(9027455-9027494)
chr6 (250-293)||(24973948-24973991)
chr6 (150-229)||(31624097-31624176)
chr6 (47-90)||(33828524-33828567)
chr6 (256-294)||(4081028-4081066)
chr6 (252-294)||(4308885-4308927)
chr6 (47-89)||(7354082-7354124)
chr6 (48-82)||(34939415-34939449)
chr6 (256-294)||(35069532-35069570)
chr6 (48-89)||(2027954-2027995)
chr6 (250-283)||(3181000-3181033)
chr6 (48-88)||(2034593-2034633)
chr6 (250-294)||(2457047-2457091)
chr6 (50-90)||(2785817-2785857)
chr6 (182-226)||(3738108-3738152)
chr6 (52-88)||(9041568-9041604)
chr6 (262-294)||(24670521-24670553)
[»] chr7 (18 HSPs)
chr7 (254-305)||(43854950-43855001)
chr7 (250-294)||(29363614-29363658)
chr7 (171-232)||(2801782-2801843)
chr7 (250-294)||(7513665-7513709)
chr7 (255-294)||(11619078-11619117)
chr7 (175-234)||(39345503-39345562)
chr7 (251-294)||(46281062-46281105)
chr7 (256-294)||(19302483-19302521)
chr7 (175-229)||(27626107-27626161)
chr7 (253-282)||(2727290-2727319)
chr7 (250-283)||(30751625-30751658)
chr7 (182-283)||(36598287-36598387)
chr7 (250-283)||(37064145-37064178)
chr7 (264-293)||(46213842-46213871)
chr7 (250-294)||(3610660-3610704)
chr7 (50-90)||(5010617-5010657)
chr7 (249-293)||(12792419-12792463)
chr7 (258-294)||(34036031-34036067)
[»] chr8 (17 HSPs)
chr8 (182-235)||(5088891-5088944)
chr8 (54-90)||(41871876-41871912)
chr8 (197-235)||(11415208-11415246)
chr8 (256-294)||(30251374-30251412)
chr8 (256-293)||(11376815-11376852)
chr8 (250-283)||(32976479-32976512)
chr8 (258-291)||(43208079-43208112)
chr8 (44-88)||(2364624-2364668)
chr8 (250-294)||(2487928-2487972)
chr8 (50-90)||(4558679-4558719)
chr8 (250-294)||(4560608-4560652)
chr8 (52-88)||(7008512-7008548)
chr8 (250-294)||(7008704-7008748)
chr8 (250-298)||(12361300-12361348)
chr8 (250-294)||(14926902-14926946)
chr8 (250-294)||(18331820-18331864)
chr8 (250-282)||(26499822-26499854)
[»] chr1 (22 HSPs)
chr1 (175-228)||(11695893-11695946)
chr1 (249-288)||(28837279-28837318)
chr1 (253-290)||(7357567-7357604)
chr1 (254-287)||(44815230-44815263)
chr1 (250-294)||(23373233-23373277)
chr1 (250-294)||(24460321-24460365)
chr1 (52-88)||(29794073-29794109)
chr1 (251-294)||(3914992-3915035)
chr1 (251-294)||(6292599-6292642)
chr1 (47-90)||(48133088-48133131)
chr1 (256-294)||(2295208-2295246)
chr1 (251-293)||(18327067-18327109)
chr1 (52-90)||(24263288-24263326)
chr1 (256-294)||(41505786-41505824)
chr1 (250-291)||(5047252-5047293)
chr1 (250-283)||(11996961-11996994)
chr1 (147-204)||(26779934-26779991)
chr1 (257-290)||(26946307-26946340)
chr1 (49-90)||(49365937-49365978)
chr1 (250-294)||(12564419-12564463)
chr1 (254-294)||(27807225-27807265)
chr1 (250-294)||(37591536-37591580)
[»] chr4 (13 HSPs)
chr4 (250-293)||(29376009-29376052)
chr4 (257-294)||(46714911-46714948)
chr4 (250-293)||(1075564-1075607)
chr4 (51-90)||(9316486-9316525)
chr4 (47-90)||(25497452-25497495)
chr4 (251-294)||(32831438-32831481)
chr4 (250-289)||(47970402-47970441)
chr4 (256-294)||(15173223-15173261)
chr4 (49-87)||(19304457-19304495)
chr4 (52-86)||(46053583-46053617)
chr4 (44-81)||(19422308-19422345)
chr4 (47-88)||(33640986-33641027)
chr4 (175-288)||(45128236-45128348)
[»] chr5 (29 HSPs)
chr5 (248-294)||(42646994-42647040)
chr5 (50-91)||(39257534-39257575)
chr5 (250-294)||(14714763-14714807)
chr5 (250-294)||(17369309-17369353)
chr5 (250-294)||(41535024-41535068)
chr5 (251-294)||(8089368-8089411)
chr5 (250-293)||(10771809-10771852)
chr5 (50-89)||(27565303-27565342)
chr5 (251-294)||(36542206-36542249)
chr5 (250-288)||(5377123-5377161)
chr5 (47-89)||(12521444-12521486)
chr5 (46-100)||(29588758-29588811)
chr5 (265-294)||(5563822-5563851)
chr5 (50-87)||(11434726-11434763)
chr5 (47-88)||(11457001-11457042)
chr5 (51-88)||(26516180-26516217)
chr5 (249-294)||(41820132-41820177)
chr5 (173-293)||(4619737-4619856)
chr5 (250-294)||(9711187-9711231)
chr5 (199-303)||(11095406-11095509)
chr5 (255-287)||(15015954-15015986)
chr5 (250-294)||(17368778-17368822)
chr5 (250-282)||(25705591-25705623)
chr5 (250-294)||(25720337-25720381)
chr5 (50-90)||(29115362-29115402)
chr5 (254-294)||(34205351-34205391)
chr5 (251-303)||(36639629-36639681)
chr5 (47-87)||(38338211-38338251)
chr5 (150-234)||(41957430-41957514)
[»] chr3 (17 HSPs)
chr3 (250-288)||(22667509-22667547)
chr3 (250-288)||(22724148-22724186)
chr3 (54-90)||(33965641-33965677)
chr3 (50-89)||(49587076-49587115)
chr3 (50-88)||(1389689-1389727)
chr3 (256-294)||(26878312-26878350)
chr3 (48-89)||(20504091-20504132)
chr3 (250-283)||(21872226-21872259)
chr3 (250-283)||(25925835-25925868)
chr3 (150-235)||(37273141-37273226)
chr3 (47-88)||(37308216-37308257)
chr3 (250-287)||(41724318-41724355)
chr3 (250-294)||(2304191-2304235)
chr3 (251-299)||(30657393-30657441)
chr3 (250-294)||(37138388-37138432)
chr3 (250-294)||(44237523-44237567)
chr3 (250-294)||(45590757-45590801)


Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 323
Target Start/End: Original strand, 31096172 - 31096481
Alignment:
Q  12 aaaggtgatgatgagctatttcagttgcactatatccctgtttggataaacaggttaattaagcgcttatagcataaactgtttttataacaaatgataa 111  Q
    |||||| |||| ||||||||||||| ||||||||| |||||||||||| |||| ||||||||| |||||||||||||| |||||||||||||||||||||    
T  31096172 aaaggtaatgacgagctatttcagtagcactatatacctgtttggatacacagtttaattaagtgcttatagcataaattgtttttataacaaatgataa 31096271  T
Q  112 aattaaagttaaaagatgttttcattgaatctaatagttgttttcacaggctatctttaaaaacttatgaaaataagtttaaagcagcttatggacatgt 211  Q
    ||||||||| |||   |||||||||| || |||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  31096272 aattaaagtcaaac--tgttttcatttaagctaatagttgctttcacaggctatctttaagaacttatgaaaataagtttaaaacagcttatggacatgt 31096369  T
Q  212 tattaactgtttccataaactctcacaagcaatatattcaagtgcttatgtcagtagataagttcaaataagccaattcaaacggaccttaaatccggca 311  Q
    |||||||||||| ||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||| |||| |||    
T  31096370 tattaactgttttcataagctctcgcaagcattatattcaagtgcttatgtcagtagataagttcaaataagccaatttaaacaggccttatatccagca 31096469  T
Q  312 gctattgcagtg 323  Q
    ||||||||||||    
T  31096470 gctattgcagtg 31096481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 320 - 379
Target Start/End: Original strand, 31096498 - 31096557
Alignment:
Q  320 agtgttaatctctatggtcgaatgcttacgcggtccttcttttgagtttgtgcaggctga 379  Q
    |||||||||||||||||||||||||||| |||||||||||  ||||||| ||||||||||    
T  31096498 agtgttaatctctatggtcgaatgcttatgcggtccttctgatgagtttatgcaggctga 31096557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 13869285 - 13869244
Alignment:
Q  49 ctgtttggataaacaggttaattaagcgcttatagcataaac 90  Q
    |||||||||||||||| | |||||||||||||||||||||||    
T  13869285 ctgtttggataaacagctcaattaagcgcttatagcataaac 13869244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 294
Target Start/End: Original strand, 25790158 - 25790274
Alignment:
Q  175 cttatgaaaataagtttaaagcagcttatggacatgttattaactgtttccataaactctcacaagcaatatattcaagtgcttatgtcagtagataagt 274  Q
    |||||||||||||||| ||| ||||||| | |||||| || | |||||||||||  |||| |||   || | | ||| ||||||||||| || ||||||     
T  25790158 cttatgaaaataagttcaaaacagcttaggaacatgtaataagctgtttccatatgctct-acag--aacagactcacgtgcttatgtctgttgataagc 25790254  T
Q  275 tcaaataagccaattcaaac 294  Q
    ||||||||||||||||||||    
T  25790255 tcaaataagccaattcaaac 25790274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 43259941 - 43259985
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    ||||||||||||  ||||||||||||||||||||||||| |||||    
T  43259941 caagtgcttatgctagtagataagttcaaataagccaatccaaac 43259985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 4350797 - 4350840
Alignment:
Q  251 aagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    ||||||||||||||||||| ||| |||||||||||||| |||||    
T  4350797 aagtgcttatgtcagtagagaagctcaaataagccaatccaaac 4350840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 88
Target Start/End: Complemental strand, 14317008 - 14316970
Alignment:
Q  50 tgtttggataaacaggttaattaagcgcttatagcataa 88  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  14317008 tgtttggataaacaaattaattaagcgcttatagcataa 14316970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 294
Target Start/End: Complemental strand, 30990401 - 30990359
Alignment:
Q  252 agtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    ||||||||||| |||||||||| |||||||||||||| |||||    
T  30990401 agtgcttatgttagtagataagctcaaataagccaatccaaac 30990359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 42131647 - 42131701
Alignment:
Q  173 aacttatgaaaataagtttaaagcagcttatggacatgttattaactgtttccat 227  Q
    |||||| | ||||||| ||||||||||||||||||||||||| |  |||||||||    
T  42131647 aacttaaggaaataagcttaaagcagcttatggacatgttataagttgtttccat 42131701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 11063303 - 11063348
Alignment:
Q  254 tgcttatgtcagtagataagttcaaataagccaattcaaacggacc 299  Q
    ||||| ||| ||||||||||||||||||||| ||| ||||||||||    
T  11063303 tgcttgtgttagtagataagttcaaataagctaatccaaacggacc 11063348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 40837394 - 40837357
Alignment:
Q  257 ttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  40837394 ttatgtcagtagataagctcaaataagccaatccaaac 40837357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 1742176 - 1742128
Alignment:
Q  66 ttaattaagcgcttatagcataaactgtttttataacaaatgataaaat 114  Q
    |||||||||| ||||||||||||||| ||| |||||||||  |||||||    
T  1742176 ttaattaagcacttatagcataaactatttctataacaaaatataaaat 1742128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 13056044 - 13056076
Alignment:
Q  47 ccctgtttggataaacaggttaattaagcgctt 79  Q
    |||||||||||||||||| ||||||||||||||    
T  13056044 ccctgtttggataaacagcttaattaagcgctt 13056076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 22878204 - 22878248
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    ||||||||||||||||| |||||| ||||||||| |||| |||||    
T  22878204 caagtgcttatgtcagtggataagctcaaataagtcaatccaaac 22878248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 40759266 - 40759310
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    ||||||||||||||| |||||||| ||||||||| |||| |||||    
T  40759266 caagtgcttatgtcaatagataagctcaaataaggcaatccaaac 40759310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 43036797 - 43036841
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||||| ||| ||||| |||||||||||||||||||| |||||    
T  43036797 caagtgctaatgacagtacataagttcaaataagccaatccaaac 43036841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 33068566 - 33068522
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  33068566 caagtgcttatgtcagtagataagttcaaataagccaatccaaac 33068522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 13908346 - 13908390
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||    
T  13908346 caagtgtttatgtcagtagataagttcaaataagtcaattcaaac 13908390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 304
Target Start/End: Complemental strand, 7351635 - 7351581
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaacggaccttaaa 304  Q
    |||||||||||||||||||||||  ||||||||| ||||| |||| |||||||||    
T  7351635 caagtgcttatgtcagtagataaactcaaataagtcaatttaaacagaccttaaa 7351581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 305
Target Start/End: Original strand, 31624371 - 31624421
Alignment:
Q  255 gcttatgtcagtagataagttcaaataagccaattcaaacggaccttaaat 305  Q
    ||||||||||||| ||||| |||||||||||||| ||||| ||||||||||    
T  31624371 gcttatgtcagtatataagctcaaataagccaatccaaacagaccttaaat 31624421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 13907971 - 13908015
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    ||||||||||||| |||||| ||||||||||||| ||||||||||    
T  13907971 caagtgcttatgttagtagaaaagttcaaataagtcaattcaaac 13908015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 294
Target Start/End: Complemental strand, 7785707 - 7785664
Alignment:
Q  251 aagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||||||||||||||||||| |||||||||| |||| |||||    
T  7785707 aagtgcttatgtcagtagataaattcaaataagacaatccaaac 7785664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 86
Target Start/End: Original strand, 9027455 - 9027494
Alignment:
Q  47 ccctgtttggataaacaggttaattaagcgcttatagcat 86  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  9027455 ccctgtttggataaacagtttaagtaagcgcttatagcat 9027494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 293
Target Start/End: Complemental strand, 24973991 - 24973948
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaa 293  Q
    |||||||||||||||| |||||||||||||||||| ||| ||||    
T  24973991 caagtgcttatgtcagcagataagttcaaataagctaatccaaa 24973948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 31624097 - 31624176
Alignment:
Q  150 tgttttcacaggctatctttaaaaacttatgaaaataagtttaaagcagcttatggacatgttattaactgtttccataa 229  Q
    |||||||| ||||||||||  | || ||||||||||||||| ||| ||||||||| |||||| || | |||||| |||||    
T  31624097 tgttttcataggctatcttggagaaattatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataa 31624176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 33828524 - 33828567
Alignment:
Q  47 ccctgtttggataaacaggttaattaagcgcttatagcataaac 90  Q
    |||||||||||||||||| |||| |||| |||||||||||||||    
T  33828524 ccctgtttggataaacagtttaactaagtgcttatagcataaac 33828567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 4081028 - 4081066
Alignment:
Q  256 cttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  4081028 cttatgtcagtagataagtttaaataagacaattcaaac 4081066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 294
Target Start/End: Original strand, 4308885 - 4308927
Alignment:
Q  252 agtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||||||||||||||||||  |||||||||||||| |||||    
T  4308885 agtgcttatgtcagtagataaactcaaataagccaatccaaac 4308927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 7354082 - 7354124
Alignment:
Q  47 ccctgtttggataaacaggttaattaagcgcttatagcataaa 89  Q
    |||||||||||||||||| ||  ||||||||||||||||||||    
T  7354082 ccctgtttggataaacagctttgttaagcgcttatagcataaa 7354124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 82
Target Start/End: Original strand, 34939415 - 34939449
Alignment:
Q  48 cctgtttggataaacaggttaattaagcgcttata 82  Q
    |||||||||||||||| ||||||||||||||||||    
T  34939415 cctgtttggataaacaagttaattaagcgcttata 34939449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 35069570 - 35069532
Alignment:
Q  256 cttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  35069570 cttatgtcagtagataagctcaaataagccaatacaaac 35069532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 2027995 - 2027954
Alignment:
Q  48 cctgtttggataaacaggttaattaagcgcttatagcataaa 89  Q
    ||||||||||||||||| || |||||||||||||| ||||||    
T  2027995 cctgtttggataaacagtttcattaagcgcttatatcataaa 2027954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 283
Target Start/End: Complemental strand, 3181033 - 3181000
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataag 283  Q
    |||||||||||||| |||||||||||||||||||    
T  3181033 caagtgcttatgtctgtagataagttcaaataag 3181000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 2034633 - 2034593
Alignment:
Q  48 cctgtttggataaacaggttaattaagcgcttatagcataa 88  Q
    ||||||||||||||||  || ||||||||||||||||||||    
T  2034633 cctgtttggataaacaatttcattaagcgcttatagcataa 2034593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 2457047 - 2457091
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||||||||||| ||||||||  |||||||||||||| |||||    
T  2457047 caagtgcttatgtcggtagataatctcaaataagccaatccaaac 2457091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 2785857 - 2785817
Alignment:
Q  50 tgtttggataaacaggttaattaagcgcttatagcataaac 90  Q
    ||||||||||||||  |||||||| ||||||||||||||||    
T  2785857 tgtttggataaacaacttaattaatcgcttatagcataaac 2785817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 3738108 - 3738152
Alignment:
Q  182 aaataagtttaaagcagcttatggacatgttattaactgtttcca 226  Q
    ||||||||| |||||||||||||||||||| || | |||||||||    
T  3738108 aaataagttgaaagcagcttatggacatgtcataagctgtttcca 3738152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 9041604 - 9041568
Alignment:
Q  52 tttggataaacaggttaattaagcgcttatagcataa 88  Q
    ||||||||||||  |||||||||||||||||||||||    
T  9041604 tttggataaacaacttaattaagcgcttatagcataa 9041568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 24670521 - 24670553
Alignment:
Q  262 tcagtagataagttcaaataagccaattcaaac 294  Q
    ||||||||||||||||||||| |||||||||||    
T  24670521 tcagtagataagttcaaataaaccaattcaaac 24670553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 43855001 - 43854950
Alignment:
Q  254 tgcttatgtcagtagataagttcaaataagccaattcaaacggaccttaaat 305  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||| ||||    
T  43855001 tgcttatgttagtagataagttcaaataagccaattcaaacagacctaaaat 43854950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 29363614 - 29363658
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||    
T  29363614 caagtgcttatgttagtagataagttcaaataagccaatccaaac 29363658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 2801782 - 2801843
Alignment:
Q  171 aaaacttatgaaaataagtttaaagcagcttatggacatgttattaactgtttccataaact 232  Q
    ||||||| |||||||||||| ||||||| | |||||||||| || ||||||||| |||||||    
T  2801782 aaaacttgtgaaaataagttaaaagcagttaatggacatgtcataaactgtttctataaact 2801843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 7513665 - 7513709
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||||||||| ||||||||||| ||||||||| ||||||||||    
T  7513665 caagtgcttatgccagtagataagctcaaataagtcaattcaaac 7513709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 294
Target Start/End: Complemental strand, 11619117 - 11619078
Alignment:
Q  255 gcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  11619117 gcttatgtcagtagataagctcaaataagccaatccaaac 11619078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 39345503 - 39345562
Alignment:
Q  175 cttatgaaaataagtttaaagcagcttatggacatgttattaactgtttccataaactct 234  Q
    |||||| ||||||| | |||||| ||||||||||||| || |||||||||||| ||||||    
T  39345503 cttatggaaataagctgaaagcaacttatggacatgtcataaactgtttccatgaactct 39345562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 294
Target Start/End: Complemental strand, 46281105 - 46281062
Alignment:
Q  251 aagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    ||||| |||||| ||||||||||||||||||||||||| |||||    
T  46281105 aagtgtttatgttagtagataagttcaaataagccaatccaaac 46281062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 19302521 - 19302483
Alignment:
Q  256 cttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  19302521 cttatgtcagtagataagctcaaataagtcaattcaaac 19302483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 27626161 - 27626107
Alignment:
Q  175 cttatgaaaataagtttaaagcagcttatggacatgttattaactgtttccataa 229  Q
    |||||| ||||||||||||| ||| |||||||||||| || | ||||||||||||    
T  27626161 cttatggaaataagtttaaaacagtttatggacatgtcataagctgtttccataa 27626107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 282
Target Start/End: Complemental strand, 2727319 - 2727290
Alignment:
Q  253 gtgcttatgtcagtagataagttcaaataa 282  Q
    ||||||||||||||||||||||||||||||    
T  2727319 gtgcttatgtcagtagataagttcaaataa 2727290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 283
Target Start/End: Original strand, 30751625 - 30751658
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataag 283  Q
    |||||||||||||||||||||||||| |||||||    
T  30751625 caagtgcttatgtcagtagataagtttaaataag 30751658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 283
Target Start/End: Complemental strand, 36598387 - 36598287
Alignment:
Q  182 aaataagtttaaagcagcttatggacatgttattaactgtttccataaactctcacaagcaatatattcaagtgcttatgtcagtagataagttcaaata 281  Q
    ||||||| | ||| ||||||||| |||||| || |  ||||||||||| ||||| ||| |||| |   ||| ||||||||||||||| ||||||||||||    
T  36598387 aaataagctgaaaacagcttatgaacatgtcataagatgtttccataagctctctcaaacaatctca-caattgcttatgtcagtagttaagttcaaata 36598289  T
Q  282 ag 283  Q
    ||    
T  36598288 ag 36598287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 283
Target Start/End: Complemental strand, 37064178 - 37064145
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataag 283  Q
    ||||||||||||||| ||||||||||||||||||    
T  37064178 caagtgcttatgtcactagataagttcaaataag 37064145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 293
Target Start/End: Original strand, 46213842 - 46213871
Alignment:
Q  264 agtagataagttcaaataagccaattcaaa 293  Q
    ||||||||||||||||||||||||||||||    
T  46213842 agtagataagttcaaataagccaattcaaa 46213871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 3610704 - 3610660
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||| ||| | ||||||||||| ||||||||||||||||||||    
T  3610704 caagtggttaggccagtagataagctcaaataagccaattcaaac 3610660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 5010657 - 5010617
Alignment:
Q  50 tgtttggataaacaggttaattaagcgcttatagcataaac 90  Q
    ||||||||||||||  ||| |||||||||||||||||||||    
T  5010657 tgtttggataaacaatttatttaagcgcttatagcataaac 5010617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 293
Target Start/End: Complemental strand, 12792463 - 12792419
Alignment:
Q  249 tcaagtgcttatgtcagtagataagttcaaataagccaattcaaa 293  Q
    ||||||| |||||| |||||||||||| ||||||| |||||||||    
T  12792463 tcaagtgtttatgtaagtagataagttgaaataagtcaattcaaa 12792419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 34036031 - 34036067
Alignment:
Q  258 tatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  34036031 tatgtcagtagataagctcaaataagtcaattcaaac 34036067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 5088891 - 5088944
Alignment:
Q  182 aaataagtttaaagcagcttatggacatgttattaactgtttccataaactctc 235  Q
    ||||||||| ||| ||||||||||||||||||| |||||||||||||| |||||    
T  5088891 aaataagttgaaaacagcttatggacatgttataaactgtttccataagctctc 5088944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 41871876 - 41871912
Alignment:
Q  54 tggataaacaggttaattaagcgcttatagcataaac 90  Q
    ||||||||||| |||||||||||||||||||||||||    
T  41871876 tggataaacagattaattaagcgcttatagcataaac 41871912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 11415208 - 11415246
Alignment:
Q  197 agcttatggacatgttattaactgtttccataaactctc 235  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  11415208 agcttatggacatgttataagctgtttccataaactctc 11415246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 30251412 - 30251374
Alignment:
Q  256 cttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  30251412 cttatgtcagtagataagctcaaataagccaatccaaac 30251374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 11376815 - 11376852
Alignment:
Q  256 cttatgtcagtagataagttcaaataagccaattcaaa 293  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  11376815 cttatatcagtagataagctcaaataagccaattcaaa 11376852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 283
Target Start/End: Original strand, 32976479 - 32976512
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataag 283  Q
    |||||||||||||||||||||||| |||||||||    
T  32976479 caagtgcttatgtcagtagataagctcaaataag 32976512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 43208112 - 43208079
Alignment:
Q  258 tatgtcagtagataagttcaaataagccaattca 291  Q
    |||||||||||||||||||||||||| |||||||    
T  43208112 tatgtcagtagataagttcaaataagtcaattca 43208079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 2364668 - 2364624
Alignment:
Q  44 tatccctgtttggataaacaggttaattaagcgcttatagcataa 88  Q
    ||||||||||||||||||||   || |||||||||||||||||||    
T  2364668 tatccctgtttggataaacaacatagttaagcgcttatagcataa 2364624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 2487972 - 2487928
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    ||||||||||||||||||||| |  |||||||||||||| |||||    
T  2487972 caagtgcttatgtcagtagatgaactcaaataagccaatccaaac 2487928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 4558679 - 4558719
Alignment:
Q  50 tgtttggataaacaggttaattaagcgcttatagcataaac 90  Q
    ||||||||||||||  ||||||| |||||||||||||||||    
T  4558679 tgtttggataaacaacttaattacgcgcttatagcataaac 4558719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 4560608 - 4560652
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    ||||||||||||||| |||||||| ||||||||| |||| |||||    
T  4560608 caagtgcttatgtcaatagataagctcaaataagtcaatccaaac 4560652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 7008512 - 7008548
Alignment:
Q  52 tttggataaacaggttaattaagcgcttatagcataa 88  Q
    ||||||||||||  |||||||||||||||||||||||    
T  7008512 tttggataaacaacttaattaagcgcttatagcataa 7008548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 7008704 - 7008748
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||||||||| ||||||||||  ||||||||| ||||||||||    
T  7008704 caagtgcttatgccagtagataaactcaaataagtcaattcaaac 7008748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 12361300 - 12361348
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaacggac 298  Q
    ||||| ||||| |||||||||||||||||||||| |||| |||| ||||    
T  12361300 caagtacttatatcagtagataagttcaaataagtcaatccaaaaggac 12361348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 14926946 - 14926902
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||||||||| ||||| ||||||||||||||| |||| |||||    
T  14926946 caagtgcttatgccagtaaataagttcaaataagtcaatccaaac 14926902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 18331820 - 18331864
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    ||||||||||||| |||||||||| ||||||||| |||| |||||    
T  18331820 caagtgcttatgttagtagataagatcaaataagtcaatccaaac 18331864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 282
Target Start/End: Original strand, 26499822 - 26499854
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataa 282  Q
    ||||||||||||||||||||||| |||||||||    
T  26499822 caagtgcttatgtcagtagataaattcaaataa 26499854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 11695893 - 11695946
Alignment:
Q  175 cttatgaaaataagtttaaagcagcttatggacatgttattaactgtttccata 228  Q
    |||||||||||||||| ||| |||||||||||||||| || |||||||||||||    
T  11695893 cttatgaaaataagttgaaaacagcttatggacatgtcataaactgtttccata 11695946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 28837318 - 28837279
Alignment:
Q  249 tcaagtgcttatgtcagtagataagttcaaataagccaat 288  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  28837318 tcaagtgcttatgtcagtagataagctcaaataagccaat 28837279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 253 - 290
Target Start/End: Original strand, 7357567 - 7357604
Alignment:
Q  253 gtgcttatgtcagtagataagttcaaataagccaattc 290  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  7357567 gtgcttatgtctgtagataagttcaaataagccaattc 7357604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 254 - 287
Target Start/End: Complemental strand, 44815263 - 44815230
Alignment:
Q  254 tgcttatgtcagtagataagttcaaataagccaa 287  Q
    ||||||||||||||||||||||||||||||||||    
T  44815263 tgcttatgtcagtagataagttcaaataagccaa 44815230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 23373277 - 23373233
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    ||||||||||| |||||||| ||||||||||||| ||||||||||    
T  23373277 caagtgcttatatcagtagacaagttcaaataagtcaattcaaac 23373233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 24460365 - 24460321
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||||| ||||||||||||||||||||||||| |||| |||||    
T  24460365 caagtgctcatgtcagtagataagttcaaataagtcaatccaaac 24460321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 29794109 - 29794073
Alignment:
Q  52 tttggataaacaggttaattaagcgcttatagcataa 88  Q
    ||||||||||||| |||||||||||||||||||||||    
T  29794109 tttggataaacagcttaattaagcgcttatagcataa 29794073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 3914992 - 3915035
Alignment:
Q  251 aagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||| |||||| |||||||||| |||||||||||||||||||||    
T  3914992 aagtccttatgccagtagataaattcaaataagccaattcaaac 3915035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 6292599 - 6292642
Alignment:
Q  251 aagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    ||||||||||||||||||||||| ||||||||| |||| |||||    
T  6292599 aagtgcttatgtcagtagataagctcaaataagtcaatccaaac 6292642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 48133131 - 48133088
Alignment:
Q  47 ccctgtttggataaacaggttaattaagcgcttatagcataaac 90  Q
    ||||||||||||| |||  |||||||||||||||||||||||||    
T  48133131 ccctgtttggatagacaacttaattaagcgcttatagcataaac 48133088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 2295208 - 2295246
Alignment:
Q  256 cttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  2295208 cttatgccagtagataagctcaaataagccaattcaaac 2295246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 293
Target Start/End: Complemental strand, 18327109 - 18327067
Alignment:
Q  251 aagtgcttatgtcagtagataagttcaaataagccaattcaaa 293  Q
    ||||||||||| ||||||||||| |||||||||||||| ||||    
T  18327109 aagtgcttatgacagtagataagctcaaataagccaatccaaa 18327067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 24263326 - 24263288
Alignment:
Q  52 tttggataaacaggttaattaagcgcttatagcataaac 90  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  24263326 tttggataaacagtttaattaagtgcttatagcataaac 24263288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 41505786 - 41505824
Alignment:
Q  256 cttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  41505786 cttatgtcagtagataagctcaaataagccaatccaaac 41505824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 291
Target Start/End: Original strand, 5047252 - 5047293
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattca 291  Q
    ||||||| ||||||| |||||||| |||||||||||||||||    
T  5047252 caagtgcctatgtcaatagataagctcaaataagccaattca 5047293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 283
Target Start/End: Complemental strand, 11996994 - 11996961
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataag 283  Q
    |||||||||||||| |||||||||||||||||||    
T  11996994 caagtgcttatgtccgtagataagttcaaataag 11996961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 204
Target Start/End: Complemental strand, 26779991 - 26779934
Alignment:
Q  147 agttgttttcacaggctatctttaaaaacttatgaaaataagtttaaagcagcttatg 204  Q
    ||||||||||| | |||||||| || |||||||||||||||||| ||| || ||||||    
T  26779991 agttgttttcataagctatcttgaagaacttatgaaaataagttgaaaacaacttatg 26779934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 26946340 - 26946307
Alignment:
Q  257 ttatgtcagtagataagttcaaataagccaattc 290  Q
    |||| |||||||||||||||||||||||||||||    
T  26946340 ttatatcagtagataagttcaaataagccaattc 26946307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 49365978 - 49365937
Alignment:
Q  49 ctgtttggataaacaggttaattaagcgcttatagcataaac 90  Q
    |||||||||||||||  ||| |||||||||||||||||||||    
T  49365978 ctgtttggataaacaacttagttaagcgcttatagcataaac 49365937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 12564463 - 12564419
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    ||||||||||| |||||| ||||| ||||||||| ||||||||||    
T  12564463 caagtgcttatatcagtatataagctcaaataagtcaattcaaac 12564419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 27807225 - 27807265
Alignment:
Q  254 tgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||||||||||||| ||||||||||||| ||||| ||||    
T  27807225 tgcttatgtcagtagaaaagttcaaataagtcaatttaaac 27807265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 37591536 - 37591580
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    ||||||||||| || ||||||||| |||||| |||||||||||||    
T  37591536 caagtgcttatatctgtagataagctcaaatgagccaattcaaac 37591580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 293
Target Start/End: Original strand, 29376009 - 29376052
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaa 293  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||    
T  29376009 caagtgcttatgtcaatagataagttcaaataagccaatccaaa 29376052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 46714948 - 46714911
Alignment:
Q  257 ttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  46714948 ttatgccagtagataagttcaaataagccaattcaaac 46714911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 293
Target Start/End: Original strand, 1075564 - 1075607
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaa 293  Q
    |||||| ||||| ||||||||||| |||||||||||||||||||    
T  1075564 caagtgtttatgccagtagataagctcaaataagccaattcaaa 1075607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 90
Target Start/End: Original strand, 9316486 - 9316525
Alignment:
Q  51 gtttggataaacaggttaattaagcgcttatagcataaac 90  Q
    |||||||||||||| |||||||||| ||||||||||||||    
T  9316486 gtttggataaacagcttaattaagcacttatagcataaac 9316525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 25497452 - 25497495
Alignment:
Q  47 ccctgtttggataaacaggttaattaagcgcttatagcataaac 90  Q
    |||| ||||||||||||| | |||||||||||||||||||||||    
T  25497452 ccctatttggataaacagatcaattaagcgcttatagcataaac 25497495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 294
Target Start/End: Complemental strand, 32831481 - 32831438
Alignment:
Q  251 aagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    ||||||||||||||||||||||| |||||| ||||||| |||||    
T  32831481 aagtgcttatgtcagtagataagctcaaatgagccaatccaaac 32831438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 289
Target Start/End: Original strand, 47970402 - 47970441
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaatt 289  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  47970402 caagtgcttatgtcagtagataagctcaaataaaccaatt 47970441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 15173261 - 15173223
Alignment:
Q  256 cttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  15173261 cttatgtcagtagataagttcaaataagtcaatccaaac 15173223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 19304457 - 19304495
Alignment:
Q  49 ctgtttggataaacaggttaattaagcgcttatagcata 87  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  19304457 ctgtttggataaacagattaattaagtgcttatagcata 19304495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 46053583 - 46053617
Alignment:
Q  52 tttggataaacaggttaattaagcgcttatagcat 86  Q
    ||||||||||||| |||||||||||||||||||||    
T  46053583 tttggataaacagcttaattaagcgcttatagcat 46053617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 19422308 - 19422345
Alignment:
Q  44 tatccctgtttggataaacaggttaattaagcgcttat 81  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  19422308 tatccatgtttggataaacagcttaattaagcgcttat 19422345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 33640986 - 33641027
Alignment:
Q  47 ccctgtttggataaacaggttaattaagcgcttatagcataa 88  Q
    |||||||||||||||||| ||||||||| |||||||| ||||    
T  33640986 ccctgtttggataaacagcttaattaagtgcttatagaataa 33641027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 288
Target Start/End: Complemental strand, 45128348 - 45128236
Alignment:
Q  175 cttatgaaaataagtttaaagcagcttatggacatgttattaactgtttccataaactctcacaagcaatatattcaagtgcttatgtcagtagataagt 274  Q
    |||||| ||||||| | ||| ||||| ||||||||| ||| |  ||||||||||| ||||| ||| ||||||   || ||| ||||| | ||||||||||    
T  45128348 cttatggaaataagctgaaaacagctcatggacatgatatcagttgtttccataagctctctcaaacaatat-cacatgtggttatgccggtagataagt 45128250  T
Q  275 tcaaataagccaat 288  Q
    ||||||||| ||||    
T  45128249 tcaaataagtcaat 45128236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 294
Target Start/End: Original strand, 42646994 - 42647040
Alignment:
Q  248 ttcaagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||||||| ||||||||||||||| |||||||||||||| |||||    
T  42646994 ttcaagtgctaatgtcagtagataagctcaaataagccaatccaaac 42647040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 39257575 - 39257534
Alignment:
Q  50 tgtttggataaacaggttaattaagcgcttatagcataaact 91  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  39257575 tgtttggataaacaacttaattaagcgcttatagcataaact 39257534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 14714807 - 14714763
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    ||||||||||||||||| |||||| |||||| |||||||||||||    
T  14714807 caagtgcttatgtcagtggataagctcaaatgagccaattcaaac 14714763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 17369309 - 17369353
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||| ||||||||||||||||||||||||||| |||| |||||    
T  17369309 caagtgattatgtcagtagataagttcaaataagtcaatccaaac 17369353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 41535068 - 41535024
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||||||||| |||||||| || ||||||||||||||||||||    
T  41535068 caagtgcttatggcagtagatgagctcaaataagccaattcaaac 41535024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 8089368 - 8089411
Alignment:
Q  251 aagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    ||||| ||||||||| |||||||||||||||||||||| |||||    
T  8089368 aagtgtttatgtcaggagataagttcaaataagccaatccaaac 8089411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 293
Target Start/End: Complemental strand, 10771852 - 10771809
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaa 293  Q
    |||||||||||| ||||||||||| |||||||||||||| ||||    
T  10771852 caagtgcttatgccagtagataagctcaaataagccaatccaaa 10771809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 89
Target Start/End: Complemental strand, 27565342 - 27565303
Alignment:
Q  50 tgtttggataaacaggttaattaagcgcttatagcataaa 89  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  27565342 tgtttggataaacagcttaattaagcgcttatagtataaa 27565303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 294
Target Start/End: Complemental strand, 36542249 - 36542206
Alignment:
Q  251 aagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||||||||| |||||||||| ||||| ||||||||||||||    
T  36542249 aagtgcttatgttagtagataagctcaaacaagccaattcaaac 36542206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 5377161 - 5377123
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaat 288  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  5377161 caagtgcttatgtcaatagataagctcaaataagccaat 5377123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 12521444 - 12521486
Alignment:
Q  47 ccctgtttggataaacaggttaattaagcgcttatagcataaa 89  Q
    |||||||||||||||||| ||||||||| |||| |||||||||    
T  12521444 ccctgtttggataaacagcttaattaagtgcttttagcataaa 12521486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 29588758 - 29588811
Alignment:
Q  46 tccctgtttggataaacaggttaattaagcgcttatagcataaactgtttttata 100  Q
    ||||||||||||||||||  | |||||||||||||||||||||||  ||||||||    
T  29588758 tccctgtttggataaacaaat-aattaagcgcttatagcataaacactttttata 29588811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 294
Target Start/End: Original strand, 5563822 - 5563851
Alignment:
Q  265 gtagataagttcaaataagccaattcaaac 294  Q
    ||||||||||||||||||||||||||||||    
T  5563822 gtagataagttcaaataagccaattcaaac 5563851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 11434763 - 11434726
Alignment:
Q  50 tgtttggataaacaggttaattaagcgcttatagcata 87  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  11434763 tgtttggataaacaggctaattaagcgctaatagcata 11434726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 11457001 - 11457042
Alignment:
Q  47 ccctgtttggataaacaggttaattaagcgcttatagcataa 88  Q
    |||||| ||||||||||| ||||| |||||||||||||||||    
T  11457001 ccctgtctggataaacagcttaatcaagcgcttatagcataa 11457042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 26516180 - 26516217
Alignment:
Q  51 gtttggataaacaggttaattaagcgcttatagcataa 88  Q
    |||||||||||||  |||||||||||||||||||||||    
T  26516180 gtttggataaacaacttaattaagcgcttatagcataa 26516217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 294
Target Start/End: Original strand, 41820132 - 41820177
Alignment:
Q  249 tcaagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    ||||||||||||| | || |||||| ||||||||||||||||||||    
T  41820132 tcaagtgcttatgcccgtggataagctcaaataagccaattcaaac 41820177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 293
Target Start/End: Original strand, 4619737 - 4619856
Alignment:
Q  173 aacttatgaaaataagtttaaagcagcttatggacatgttattaactgtttccataaactctcacaagcaatatattcaagtgcttatgtcagtagataa 272  Q
    |||||||| ||||||| | ||| ||||||||| |||||| ||||  ||||| ||||| ||||| ||| || | | | |||||||||||||||| | ||||    
T  4619737 aacttatggaaataaggtgaaaccagcttatgaacatgtcattagttgttttcataagctctcccaaacagtgt-tgcaagtgcttatgtcagcaaataa 4619835  T
Q  273 gttcaaataagccaattcaaa 293  Q
       ||||||||||||| ||||    
T  4619836 acacaaataagccaatccaaa 4619856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 9711231 - 9711187
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||||||||| ||||||||||| |||||||||  |||||||||    
T  9711231 caagtgcttatggcagtagataagatcaaataagaaaattcaaac 9711187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 11095509 - 11095406
Alignment:
Q  199 cttatggacatgttattaactgtttccataaactctcacaagcaatatattcaagtgcttatgtcagtagataagttcaaataagccaattcaaacggac 298  Q
    ||||||||||||| || | ||||||||| ||  |||| ||| ||||||   |||||| ||||||||||||||||| | |||||| ||| | ||||| |||    
T  11095509 cttatggacatgtcataagctgtttccacaagttctctcaaacaatatca-caagtgtttatgtcagtagataagcttaaataaaccagtccaaacagac 11095411  T
Q  299 cttaa 303  Q
    |||||    
T  11095410 cttaa 11095406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 287
Target Start/End: Original strand, 15015954 - 15015986
Alignment:
Q  255 gcttatgtcagtagataagttcaaataagccaa 287  Q
    ||||||||||||||||||| |||||||||||||    
T  15015954 gcttatgtcagtagataagctcaaataagccaa 15015986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 17368778 - 17368822
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||||||||| ||||||||||||| ||||||| |||| |||||    
T  17368778 caagtgcttatgccagtagataagtttaaataagtcaatccaaac 17368822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 282
Target Start/End: Complemental strand, 25705623 - 25705591
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataa 282  Q
    ||||||||||||| |||||||||||||||||||    
T  25705623 caagtgcttatgttagtagataagttcaaataa 25705591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 25720381 - 25720337
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||||||||| ||||||||||  |||||||||| |||||||||    
T  25720381 caagtgcttatgccagtagataacctcaaataagctaattcaaac 25720337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 29115402 - 29115362
Alignment:
Q  50 tgtttggataaacaggttaattaagcgcttatagcataaac 90  Q
    ||||||||||||||  ||||||| |||||||||||||||||    
T  29115402 tgtttggataaacactttaattacgcgcttatagcataaac 29115362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 34205351 - 34205391
Alignment:
Q  254 tgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||||||||||| ||||||||||||||| |||| |||||    
T  34205351 tgcttatgtcagtaaataagttcaaataagtcaatccaaac 34205391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 36639629 - 36639681
Alignment:
Q  251 aagtgcttatgtcagtagataagttcaaataagccaattcaaacggaccttaa 303  Q
    |||||||||||| | ||| |||||||||||||| |||| ||||| ||||||||    
T  36639629 aagtgcttatgtaaataggtaagttcaaataagacaatccaaacagaccttaa 36639681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 38338211 - 38338251
Alignment:
Q  47 ccctgtttggataaacaggttaattaagcgcttatagcata 87  Q
    |||||||||||| ||||| ||||||||||| ||||||||||    
T  38338211 ccctgtttggatgaacagcttaattaagcgtttatagcata 38338251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 41957514 - 41957430
Alignment:
Q  150 tgttttcacaggctatctttaaaaacttatgaaaataagtttaaagcagcttatggacatgttattaactgtttccataaactct 234  Q
    |||||||| | |||||| || | |||||||||||||||| | ||| || ||||||||||||| || | |||||||| ||| ||||    
T  41957514 tgttttcataagctatccttgagaacttatgaaaataagatgaaaacaacttatggacatgtcataagctgtttccgtaagctct 41957430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 22667509 - 22667547
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaat 288  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  22667509 caagtgcttatgtcagtagataagctcaaataagccaat 22667547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 22724148 - 22724186
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaat 288  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  22724148 caagtgcttatgtcagtagataagctcaaataagccaat 22724186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 33965677 - 33965641
Alignment:
Q  54 tggataaacaggttaattaagcgcttatagcataaac 90  Q
    ||||||||||| |||||||||||||||||||||||||    
T  33965677 tggataaacagcttaattaagcgcttatagcataaac 33965641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 89
Target Start/End: Complemental strand, 49587115 - 49587076
Alignment:
Q  50 tgtttggataaacaggttaattaagcgcttatagcataaa 89  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  49587115 tgtttggataaacagtttaattaagcgcttctagcataaa 49587076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 88
Target Start/End: Original strand, 1389689 - 1389727
Alignment:
Q  50 tgtttggataaacaggttaattaagcgcttatagcataa 88  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  1389689 tgtttggataaacaagttaattaagctcttatagcataa 1389727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 26878312 - 26878350
Alignment:
Q  256 cttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||||||||||||||| || |||||||||||||||||    
T  26878312 cttatgtcagtagataagctcgaataagccaattcaaac 26878350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 20504091 - 20504132
Alignment:
Q  48 cctgtttggataaacaggttaattaagcgcttatagcataaa 89  Q
    |||||||| |||||||| |||||||||||||||||| |||||    
T  20504091 cctgtttgaataaacagcttaattaagcgcttatagtataaa 20504132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 283
Target Start/End: Complemental strand, 21872259 - 21872226
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataag 283  Q
    |||||||||||||||||||||||| |||||||||    
T  21872259 caagtgcttatgtcagtagataagatcaaataag 21872226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 283
Target Start/End: Original strand, 25925835 - 25925868
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataag 283  Q
    |||||||||||| |||||||||||||||||||||    
T  25925835 caagtgcttatgccagtagataagttcaaataag 25925868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 235
Target Start/End: Original strand, 37273141 - 37273226
Alignment:
Q  150 tgttttcacaggctatctttaaaaacttatgaaaataagtttaaagcagcttatggacatgttattaactgtttccataaactctc 235  Q
    |||||||| | ||||||||  | |||||||| ||||||||| ||| || ||||||||||||| || |  ||||||||||| |||||    
T  37273141 tgttttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctc 37273226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 37308257 - 37308216
Alignment:
Q  47 ccctgtttggataaacaggttaattaagcgcttatagcataa 88  Q
    |||||||||||||||||  ||||||||| |||||||||||||    
T  37308257 ccctgtttggataaacaacttaattaagtgcttatagcataa 37308216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 287
Target Start/End: Original strand, 41724318 - 41724355
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaa 287  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  41724318 caagtacttatgtcagtagataagttcaaataatccaa 41724355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 2304235 - 2304191
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||| |||||  ||||||| |||||||||||||||||||||||    
T  2304235 caagtgtttatgctagtagatcagttcaaataagccaattcaaac 2304191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 30657393 - 30657441
Alignment:
Q  251 aagtgcttatgtcagtagataagttcaaataagccaattcaaacggacc 299  Q
    ||||||||||||||||||||||  ||||||||  |||||||||| ||||    
T  30657393 aagtgcttatgtcagtagataaactcaaataaatcaattcaaacagacc 30657441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 37138388 - 37138432
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||| |||||||||||||||| ||| ||||||||||| |||||    
T  37138388 caagtgtttatgtcagtagataaattctaataagccaatccaaac 37138432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 44237523 - 44237567
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    |||||||||||||||||||||||  |||||||| |||||| ||||    
T  44237523 caagtgcttatgtcagtagataaactcaaataaaccaatttaaac 44237567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 45590757 - 45590801
Alignment:
Q  250 caagtgcttatgtcagtagataagttcaaataagccaattcaaac 294  Q
    ||||||||||||  |||||||||||||||| ||| ||||||||||    
T  45590757 caagtgcttatgctagtagataagttcaaaaaagtcaattcaaac 45590801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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