View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1307_low_15 (Length: 489)

Name: NF1307_low_15
Description: NF1307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1307_low_15
NF1307_low_15
[»] chr4 (3 HSPs)
chr4 (104-460)||(49108884-49109237)
chr4 (355-460)||(49534069-49534175)
chr4 (219-260)||(49533937-49533978)
[»] chr5 (1 HSPs)
chr5 (383-460)||(7524565-7524643)
[»] chr1 (2 HSPs)
chr1 (299-425)||(38175951-38176076)
chr1 (219-260)||(38175853-38175894)
[»] chr8 (1 HSPs)
chr8 (303-399)||(40053936-40054031)
[»] scaffold0037 (2 HSPs)
scaffold0037 (21-72)||(32361-32412)
scaffold0037 (21-72)||(103152-103203)
[»] chr6 (1 HSPs)
chr6 (25-72)||(10426956-10427003)
[»] chr2 (1 HSPs)
chr2 (162-297)||(43849750-43849884)


Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 104 - 460
Target Start/End: Original strand, 49108884 - 49109237
Alignment:
Q  104 tcattaattttttaacgtgatgacagattcttgaatacacaatagatacaaaacaatacctccagtatcaaaatgtgaaataaatatattatatctcaaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  49108884 tcattaattttttaacgtgatgacagattcttgaatacacaatagatacaaaacaatacctccagtatcaaaatgtgaaataaatatatcatatctcaaa 49108983  T
Q  204 ttccaatagtctttcaatcaatcatacaaactatgagcctacgcacacaaaattttattttgagtaatgatcatgtttcagaatttgaaggctatattca 303  Q
    ||| ||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49108984 ttcaaatagtctt-caatcaatcatacaaactatgagcctacgcacacaa--ttttattttgagtaatgatcatgtttcagaatttgaaggctatattca 49109080  T
Q  304 cttaataacttgtgagtcttatacaccacaaattgatttattcctaaacactatcatcagatagaatttcccattttatcaattcagataatattacttc 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  49109081 cttaataacttgtgagtcttatacaccacaaattgatttattcctaaacactatcatcatatggaatttcccattttatcaattcagataatattacttc 49109180  T
Q  404 aaacctacaaacactgccctatatatctgaagatcaccccttaattcagataagagg 460  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  49109181 aaacctacaaacactgccctatagatctgaagatcaccccttaatttagataagagg 49109237  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 355 - 460
Target Start/End: Original strand, 49534069 - 49534175
Alignment:
Q  355 tatcatcagatagaatttcccattttatcaattcagataatattacttcaaacctacaaacactgccctatatat-ctgaagatcaccccttaattcaga 453  Q
    ||||||||||  ||||||||| | ||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| |    
T  49534069 tatcatcagaaggaatttcccctgttaccaattcagataatattactttaaacctacaaacactgccctatatatgctgaaaatcaccccttaattcata 49534168  T
Q  454 taagagg 460  Q
    |||||||    
T  49534169 taagagg 49534175  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 49533937 - 49533978
Alignment:
Q  219 aatcaatcatacaaactatgagcctacgcacacaaaatttta 260  Q
    |||||||||||||||||||||| | || ||||||||||||||    
T  49533937 aatcaatcatacaaactatgaggccacacacacaaaatttta 49533978  T

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Target: chr5 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 383 - 460
Target Start/End: Complemental strand, 7524643 - 7524565
Alignment:
Q  383 caattcagataatattacttcaaacctacaaacactgccctatatat-ctgaagatcaccccttaattcagataagagg 460  Q
    ||||||||| |||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  7524643 caattcagacaatattacttcaaagctacaaacactgccctaaatatgctgaagatcaccccttaattcagataagagg 7524565  T

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Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 299 - 425
Target Start/End: Original strand, 38175951 - 38176076
Alignment:
Q  299 attcacttaataacttgtgagtcttatacaccacaaattgatttattcctaaacactatcatcagatagaatttcccattttatcaattcagataatatt 398  Q
    |||||||| ||||||| ||| |||||||||| |||||||  |||||||| || || ||||||||||  ||||||||| | ||| |||||||||||||| |    
T  38175951 attcacttgataacttatgactcttatacactacaaatttctttattcccaagcattatcatcagaaggaatttcccctgttaccaattcagataata-t 38176049  T
Q  399 acttcaaacctacaaacactgccctat 425  Q
    |||||||| ||||||||||||||||||    
T  38176050 acttcaaagctacaaacactgccctat 38176076  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 38175853 - 38175894
Alignment:
Q  219 aatcaatcatacaaactatgagcctacgcacacaaaatttta 260  Q
    |||||||||||||||||||||| | || ||||||||||||||    
T  38175853 aatcaatcatacaaactatgaggccacacacacaaaatttta 38175894  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 303 - 399
Target Start/End: Complemental strand, 40054031 - 40053936
Alignment:
Q  303 acttaataacttgtgagtcttatacaccacaaattgatttattcctaaacactatcatcagatagaatttcccattttatcaattcagataatatta 399  Q
    |||||||||||||| |||||| ||||| ||||||| ||||||||||||||| ||||||||||| ||||||||| ||||| ||||||||||| |||||    
T  40054031 acttaataacttgtcagtcttctacactacaaatttatttattcctaaacattatcatcagatggaatttccc-ttttaccaattcagatactatta 40053936  T

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Target: scaffold0037 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 32361 - 32412
Alignment:
Q  21 tgtggaatatgctccactttacactcttcgactttatgaaaaaaccgagaca 72  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32361 tgtggaatatgctccactttacactcttcgactttatgaaaaaaacgagaca 32412  T

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Target: scaffold0037; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 103203 - 103152
Alignment:
Q  21 tgtggaatatgctccactttacactcttcgactttatgaaaaaaccgagaca 72  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  103203 tgtggaatatgctccactttacactcttcgactttatgaaaaaaacgagaca 103152  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 10426956 - 10427003
Alignment:
Q  25 gaatatgctccactttacactcttcgactttatgaaaaaaccgagaca 72  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||    
T  10426956 gaatatgctccactttacactcttcgactttatgaaaataacgagaca 10427003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 297
Target Start/End: Complemental strand, 43849884 - 43849750
Alignment:
Q  162 cctccagtatcaaaatgtgaaataaatat---att-atatctcaaattccaatagtctttcaatcaatcatacaaactatgagcctacgcacacaaaatt 257  Q
    |||||||||||||||||  ||||||||||   ||| ||||||||||||  ||||||||  |||| |||||||||||||||||| |    |||||| ||||    
T  43849884 cctccagtatcaaaatggtaaataaatatcatattcatatctcaaatttaaatagtctg-caatgaatcatacaaactatgagac----cacacacaatt 43849790  T
Q  258 ttattttgagtaatgatcatgtttcagaatttgaaggcta 297  Q
    ||||||||||||||  | || ||||| || ||||||||||    
T  43849789 ttattttgagtaatcgtgatatttcacaagttgaaggcta 43849750  T

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