View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1307_low_21 (Length: 422)
Name: NF1307_low_21
Description: NF1307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1307_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 96 - 411
Target Start/End: Complemental strand, 6916688 - 6916373
Alignment:
| Q |
96 |
accaaaactacaattcttttttctagataactacccccaataaatttaggaccgtgtacttgaaaggccatatcattcagctgccttattgcccttgtat |
195 |
Q |
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| T |
6916688 |
accaaaaccacaattcttttttccagataactacccccaaaaaatttaggaccgtgtacttgaaaggccatatcattcagctgccttattgcccttgtat |
6916589 |
T |
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| Q |
196 |
gtgtttatcaatcgggtctgtacatcatgagaaacacgtgaatgttccttatattccattgtgaattcaccctttccctgtgtcatcgaacgaatagccg |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916588 |
gtgtttatcaatcgggtctgtacatcatgagaaacacgtgaatgttccttatattccattgtgaattcaccctttccctgtgtcatcgaacgaatagccg |
6916489 |
T |
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| Q |
296 |
tagaatacccaaacatattgttaagagggacatgagctgttatgacagaatcatcttcatcctgatcattgccaacaatcacaccttttctcttgttgag |
395 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
6916488 |
tagaatacccaaacatattgttaagaggcacatgagctgtaatgacagaataatcttcgtcctgaacattgccaacaatcacaccttttctcttgttgag |
6916389 |
T |
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| Q |
396 |
gtcaccagcaacagct |
411 |
Q |
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|||||||||||||||| |
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| T |
6916388 |
gtcaccagcaacagct |
6916373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 167 - 275
Target Start/End: Original strand, 15035941 - 15036049
Alignment:
| Q |
167 |
atcattcagctgccttattgcccttgtatgtgtttatcaatcgggtctgtacatcatgagaaacacgtgaatgttccttatattccattgtgaattcacc |
266 |
Q |
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| T |
15035941 |
atcattcaggtgccttattgcccttgtatgcgtttaccaattgggtctgtacatcatgagaaacaggtgaatgttccttatattccattgtaaattcacc |
15036040 |
T |
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| Q |
267 |
ctttccctg |
275 |
Q |
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| T |
15036041 |
ctttccctg |
15036049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 326
Target Start/End: Original strand, 15036138 - 15036192
Alignment:
| Q |
272 |
cctgtgtcatcgaacgaatagccgtagaatacccaaacatattgttaagagggac |
326 |
Q |
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| T |
15036138 |
cctgtgtcatcgaacgaagagctgtagagtacccaaacatattgttaagagggac |
15036192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 325 - 387
Target Start/End: Original strand, 15037676 - 15037738
Alignment:
| Q |
325 |
acatgagctgttatgacagaatcatcttcatcctgatcattgccaacaatcacaccttttctc |
387 |
Q |
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| T |
15037676 |
acatgagctataatgacagagtcatctccatcctgatcattgccaacaatcataccctttctc |
15037738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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