View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1307_low_24 (Length: 334)
Name: NF1307_low_24
Description: NF1307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1307_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 37 - 327
Target Start/End: Original strand, 53502639 - 53502931
Alignment:
| Q |
37 |
gctactggtcaagggaggttgaaatgggtgcagaagaattacatgatatacaattactgcaaagatacaaaacgatttccacagggtttacctccagagt |
136 |
Q |
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| T |
53502639 |
gctactggtcaagggaggttgaaatgggtgcagaagaattacatgatatacaattactgcaaagatacaaaacgatttccacagggtttacctccagagt |
53502738 |
T |
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| Q |
137 |
gcaaccactcgtaaagagaaaactgtgcaacccctct--aatatttccccattatcactgcaattctagcattagtttgtagcttagtatgattctttca |
234 |
Q |
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| T |
53502739 |
gcaaccactcgtaaagagaaaactgtgcaacccctctgtaatatttccccattatcactgcaattctagcattagtttgtagcttagtatgattctttca |
53502838 |
T |
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| Q |
235 |
ttcgttttgatctctgtcatcacactaggaaacatttgcagccattcatcaaatgtgtaacatcttttttataataaaatcaggttcttttct |
327 |
Q |
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| T |
53502839 |
ttcgttttgatctctgtcatcacgctaggaaacatttgtagccattcatcaaatgtgtaacatcttttttataataaaaacaggttcttttct |
53502931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 53488524 - 53488484
Alignment:
| Q |
58 |
aaatgggtgcagaagaattacatgatatacaattactgcaa |
98 |
Q |
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| T |
53488524 |
aaatgggtccagaagaattacatgatttacaattactgcaa |
53488484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 52591272 - 52591329
Alignment:
| Q |
59 |
aatgggtgcagaagaattacatgatatacaattactgcaaagatacaaaacgatttcc |
116 |
Q |
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| T |
52591272 |
aatgggtgcaaaagaattacatgatttacaattattgcactgatactaagcgatttcc |
52591329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 37189160 - 37189222
Alignment:
| Q |
61 |
tgggtgcagaagaattacatgatatacaattactgcaaagatacaaaacgatttccacagggt |
123 |
Q |
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| T |
37189160 |
tgggtgcagaagaattatatgatctacaactactgcactgataccaaaagatttcctcagggt |
37189222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 16942908 - 16942944
Alignment:
| Q |
61 |
tgggtgcagaagaattacatgatatacaattactgca |
97 |
Q |
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| T |
16942908 |
tgggtgcaaaagaattacatgatatataattactgca |
16942944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 17013573 - 17013609
Alignment:
| Q |
61 |
tgggtgcagaagaattacatgatatacaattactgca |
97 |
Q |
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| T |
17013573 |
tgggtgcaaaagaattacatgatatataattactgca |
17013609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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