View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1307_low_25 (Length: 324)
Name: NF1307_low_25
Description: NF1307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1307_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 6916498 - 6916230
Alignment:
| Q |
1 |
cgaatagccgtagaatacccaaacatattgttaagagggacatgagctgttatgacagaatcatcttcatcctgatcattgccaacaatcacaccttttc |
100 |
Q |
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| T |
6916498 |
cgaatagccgtagaatacccaaacatattgttaagaggcacatgagctgtaatgacagaataatcttcgtcctgaacattgccaacaatcacaccttttc |
6916399 |
T |
|
| Q |
101 |
tcttgttgaggtcaccagcaacagctccctgaaattctgttggtactttcagttcaacaagcataacaggttctaatataactggtctggaagctgtgta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916398 |
tcttgttgaggtcaccagcaacagctccctgaaattctgttggtactttcagttc----agcataacaggttctaatataactggtctggaagctgtgta |
6916303 |
T |
|
| Q |
201 |
acactctctaaaagcatagatagaagccaacttaaaggcaagttcactggaatcaacatcatgagcagcacca |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916302 |
acactctctaaaagcatagatagaagccaacttaaaggcaagttcactggaatcaacatcatgagcagcacca |
6916230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 102 - 205
Target Start/End: Original strand, 15037825 - 15037928
Alignment:
| Q |
102 |
cttgttgaggtcaccagcaacagctccctgaaattctgttggtactttcagttcaacaagcataacaggttctaatataactggtctggaagctgtgtaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||| ||||||||| |||||||||||| |||||| |
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| T |
15037825 |
cttgttgaggtcaccagcaacagctccctgaaattcatttggtacttttagctcaacaagcataacaggctctaatatagttggtctggaagcagtgtaa |
15037924 |
T |
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| Q |
202 |
cact |
205 |
Q |
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|||| |
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| T |
15037925 |
cact |
15037928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 207 - 273
Target Start/End: Original strand, 15038055 - 15038121
Alignment:
| Q |
207 |
tctaaaagcatagatagaagccaacttaaaggcaagttcactggaatcaacatcatgagcagcacca |
273 |
Q |
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| T |
15038055 |
tctaaaagcatagatagaagccatcttaaaggcaagctcactggaatcaacagcatgagcagcacca |
15038121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 15037676 - 15037738
Alignment:
| Q |
40 |
acatgagctgttatgacagaatcatcttcatcctgatcattgccaacaatcacaccttttctc |
102 |
Q |
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||||||||| | |||||||| |||||| |||||||||||||||||||||||| ||| |||||| |
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| T |
15037676 |
acatgagctataatgacagagtcatctccatcctgatcattgccaacaatcataccctttctc |
15037738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 15036152 - 15036192
Alignment:
| Q |
1 |
cgaatagccgtagaatacccaaacatattgttaagagggac |
41 |
Q |
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|||| ||| ||||| |||||||||||||||||||||||||| |
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| T |
15036152 |
cgaagagctgtagagtacccaaacatattgttaagagggac |
15036192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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