View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1307_low_27 (Length: 318)
Name: NF1307_low_27
Description: NF1307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1307_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 30 - 274
Target Start/End: Complemental strand, 35040844 - 35040600
Alignment:
| Q |
30 |
ggcacaacgttgaagattaattttgtgacttaacctagagtattaattttgactaaaagcttcggtagacaaacgtggagtaagaatgacttcaagtgga |
129 |
Q |
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| T |
35040844 |
ggcacaacgttgaagattaattttgtgacttaacctagagcattaattttgactaaaagcttcggtagacaaacgtggagtaagaatgacttcaagtgga |
35040745 |
T |
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| Q |
130 |
gaggctttgattgtggtgagtccgctttgttcaaccatatcaactggtcctccatctttagtcacaatgtcaaatccatgcaataaagtagcaagtgtta |
229 |
Q |
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| T |
35040744 |
gaggctttgattgtggtgagtccgctttgttcaaccatatcaactggtcctccatctttagtcacaatgtcaaacccatgcaataaagtagcaagtgtta |
35040645 |
T |
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| Q |
230 |
tttgcatcagctgaagactaaatgagattccaggacatattcttc |
274 |
Q |
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| T |
35040644 |
tttgcatcagctgaagactaaatgagattccaggacatattcttc |
35040600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 97 - 274
Target Start/End: Complemental strand, 35048399 - 35048222
Alignment:
| Q |
97 |
gacaaacgtggagtaagaatgacttcaagtggagaggctttgattgtggtgagtccgctttgttcaaccatatcaactggtcctccatctttagtcacaa |
196 |
Q |
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| T |
35048399 |
gacaaacgtggagtaagaatgacttctagaggagatgctttgacgttggtcagtccactttgttcaaccataccaactggtcctccatcttgagtcacta |
35048300 |
T |
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| Q |
197 |
tgtcaaatccatgcaataaagtagcaagtgttatttgcatcagctgaagactaaatgagattccaggacatattcttc |
274 |
Q |
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| T |
35048299 |
tatcaaatccatgcaacaaagttgcaagtgttatttgaattagcttaagaccaaatgatattccgggacacattcttc |
35048222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 97 - 274
Target Start/End: Complemental strand, 35026814 - 35026637
Alignment:
| Q |
97 |
gacaaacgtggagtaagaatgacttcaagtggagaggctttgattgtggtgagtccgctttgttcaaccatatcaactggtcctccatctttagtcacaa |
196 |
Q |
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|||||||||||| |||| ||||||| || ||||| |||||||| |||| | ||| ||| ||||||||||||||| |||||||||||| |||||| | |
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| T |
35026814 |
gacaaacgtggactaaggatgacttgtagaggagaagctttgatgttggtcattccacttatttcaaccatatcaaccggtcctccatctgaagtcacta |
35026715 |
T |
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| Q |
197 |
tgtcaaatccatgcaataaagtagcaagtgttatttgcatcagctgaagactaaatgagattccaggacatattcttc |
274 |
Q |
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| T |
35026714 |
tgtcaaacccatgcaacaatgtagcaagtgttatttgcataagttgaagaccaaatgagattccaggacacattcttc |
35026637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 97 - 274
Target Start/End: Complemental strand, 35032760 - 35032583
Alignment:
| Q |
97 |
gacaaacgtggagtaagaatgacttcaagtggagaggctttgattgtggtgagtccgctttgttcaaccatatcaactggtcctccatctttagtcacaa |
196 |
Q |
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|||||||| ||| |||||||||||| | ||||||||||||| |||| |||| | ||||||||||||| ||||||||||||||||| |||||| | |
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| T |
35032760 |
gacaaacgcggattaagaatgacttgtaaaggagaggctttgacattggtcagtctacagtgttcaaccatattaactggtcctccatcttgagtcacta |
35032661 |
T |
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| Q |
197 |
tgtcaaatccatgcaataaagtagcaagtgttatttgcatcagctgaagactaaatgagattccaggacatattcttc |
274 |
Q |
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||| ||| |||||||| || | ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35032660 |
tgttaaacccatgcaacaatgcagcaagtgtgatttgcatcaactgaagactaaatgagattccaggacatattcttc |
35032583 |
T |
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