View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1307_low_28 (Length: 317)

Name: NF1307_low_28

Description: NF1307

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1307_low_28

[»] scaffold0179 (3 HSPs)

Target: scaffold0179 (Bit Score: 48; Significance: 2e-18; HSPs: 3)

Name: scaffold0179

Description:

Target: scaffold0179; HSP #1

Raw Score: 48; E-Value: 2e-18

Query Start/End: Original strand, 184 - 239

Target Start/End: Original strand, 2396 - 2451

Alignment:

Q	184	ttaacaggggaggttacttgcgaaaggtggaccaacatgatttcaaaggacatttt	239	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2396	ttaacaggggaggttacttgcaaaaggtggaccaacatgttttcaaaggacatttt	2451	T

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Target: scaffold0179; HSP #2

Raw Score: 36; E-Value: 0.00000000003

Query Start/End: Original strand, 268 - 307

Target Start/End: Original strand, 2456 - 2495

Alignment:

Q	268	tagaatataagctagcaggatttcatgtttttcgcctatg	307	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	2456	tagaatataagctagcaggatttcatgtttttcgcttatg	2495	T

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Target: scaffold0179; HSP #3

Raw Score: 32; E-Value: 0.000000007

Query Start/End: Original strand, 236 - 271

Target Start/End: Original strand, 2484 - 2519

Alignment:

Q	236	ttttcgcttatggttctgttgtgatcttgtgataga	271	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	2484	ttttcgcttatggttctgttgtgattttgtgataga	2519	T

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